Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 0.0e+00 1472.6 779 100.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1199.1 782 80.9
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 0.0e+00 1139.4 784 78.3
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 0.0e+00 1114.0 784 76.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 0.0e+00 1101.3 787 76.4
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 0.0e+00 1097.4 790 74.3
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1092.4 773 76.3
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1091.6 784 76.3
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 0.0e+00 1089.3 788 75.4
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 0.0e+00 1088.2 789 74.9
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 0.0e+00 1086.6 787 76.0
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 0.0e+00 1085.1 803 74.8
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 0.0e+00 1084.7 786 74.9
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 0.0e+00 1082.0 777 75.7
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 0.0e+00 1081.6 781 75.3
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 0.0e+00 1076.2 836 72.2
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 5.3e-312 1073.5 779 74.2
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 2.7e-311 1071.6 781 74.8
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.2e-309 1066.2 789 74.3
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 4.5e-309 1064.3 788 73.9
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 7.6e-309 1063.5 783 73.8
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.6e-306 1055.8 777 73.9
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.0e-305 1053.1 774 73.0
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.3e-304 1048.1 790 72.2
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 7.4e-304 1047.0 792 71.0
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 2.1e-303 1045.4 775 72.8
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 2.4e-302 1042.0 771 73.9
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.1e-302 1041.6 785 72.0
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 4.0e-302 1041.2 781 73.0
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.5e-301 1039.3 785 72.0
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 3.8e-300 1034.6 783 70.6
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 7.1e-299 1030.4 775 71.9
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 9.3e-299 1030.0 740 74.7
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.2e-298 1029.6 777 71.7
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 6.0e-298 1027.3 783 72.0
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.3e-297 1026.2 835 68.6
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 6.7e-297 1023.8 779 71.4
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 1.5e-296 1022.7 790 71.1
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.9e-296 1022.3 783 70.4
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 3.3e-296 1021.5 782 72.3
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.3e-296 1021.1 782 72.4
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 7.4e-296 1020.4 781 71.6
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 9.6e-296 1020.0 782 71.9
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 6.2e-295 1017.3 791 71.4
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 8.2e-295 1016.9 778 73.3
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.8e-294 1015.8 810 68.8
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.0e-294 1014.6 782 72.4
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 9.0e-294 1013.4 773 71.4
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.0e-292 1010.0 783 71.4
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.0e-292 1010.0 761 72.5
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 4.9e-292 1007.7 780 70.8
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 7.9e-290 1000.3 819 66.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 1.8e-289 999.2 783 71.1
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 5.7e-288 994.2 780 69.9
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 9.7e-288 993.4 779 70.0
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 3.7e-287 991.5 724 74.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 3.7e-287 991.5 768 70.7
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 4.8e-287 991.1 785 70.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.4e-286 988.8 781 70.3
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 9.0e-286 986.9 799 67.3
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 2.6e-285 985.3 664 77.3
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 3.4e-285 984.9 780 70.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.2e-284 982.2 723 71.9
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 3.2e-283 978.4 780 69.5
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 5.5e-283 977.6 779 69.4
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.2e-283 977.2 766 70.5
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 3.6e-282 974.9 759 71.7
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 7.9e-282 973.8 806 66.4
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 7.4e-280 967.2 749 68.6
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 8.2e-279 963.8 786 68.3
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.4e-278 963.0 789 68.3
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 1.5e-277 959.5 775 67.4
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.0e-277 959.1 772 68.8
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 5.9e-277 957.6 727 70.8
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 5.5e-275 951.0 636 76.4
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 7.2e-275 950.7 780 66.2
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.3e-273 945.7 791 67.5
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.5e-272 943.0 804 66.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.0e-272 942.6 729 69.8
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 7.4e-272 940.6 796 68.5
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.7e-271 939.5 777 65.1
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.1e-270 936.8 806 65.6
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.5e-269 931.4 774 64.7
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 2.2e-268 929.1 710 72.0
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.9e-268 928.7 580 79.3
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 2.2e-263 912.5 678 72.3
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 3.7e-263 911.8 774 64.9
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 4.1e-262 908.3 560 80.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.9e-259 899.4 799 64.7
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 4.0e-257 891.7 782 65.6
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 8.8e-257 890.6 779 62.6
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.8e-255 884.8 803 61.6
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 4.2e-243 845.1 528 78.4
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.8e-242 842.4 785 63.6
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-237 827.0 680 67.5
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 6.6e-228 794.7 670 63.1
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 5.8e-224 781.6 750 57.6
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.2e-213 747.3 622 60.9
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.2e-208 730.7 740 56.9
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.4e-201 707.2 560 62.1
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 4.0e-201 705.7 409 83.4
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 4.2e-190 669.1 344 91.9
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.1e-185 654.4 602 64.8
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 7.1e-182 641.7 749 54.2
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 8.4e-175 618.2 597 52.4
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.3e-170 602.1 360 81.4
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.4e-164 584.3 525 55.0
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.1e-161 572.8 586 50.9
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.2e-158 563.1 596 58.4
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 5.6e-126 456.1 578 44.3
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 5.2e-124 449.5 550 49.6
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 3.4e-123 446.8 623 41.7
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 7.0e-121 439.1 255 78.8
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 9.8e-115 418.7 431 62.9
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.3e-108 397.5 573 41.9
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.1e-101 372.5 214 84.6
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.6e-96 358.2 411 43.1
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 4.7e-93 346.7 179 92.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 8.4e-90 335.9 263 66.2
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 4.0e-76 290.4 416 50.5
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.4e-73 281.2 157 82.8
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.5e-62 244.6 309 51.5
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-59 235.3 172 68.0
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.0e-50 203.8 294 50.3
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.5e-49 201.4 239 56.9
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 5.9e-43 180.3 97 86.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.3e-37 160.2 299 42.1
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.1e-32 143.7 97 75.3
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.8e-28 132.1 226 50.4
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 4.0e-23 114.4 197 52.8
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 5.4e-20 104.0 115 53.0
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.0e-18 97.4 131 48.1
QL02p047771 Quercus lobata HOM05D000003 ORTHO05D000006 6.1e-16 90.5 79 60.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-15 89.0 275 35.3
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.0e-15 88.2 173 41.6
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.7e-14 84.0 173 40.5
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.8e-10 71.2 161 39.1
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 4.3e-09 67.8 78 64.1
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 4.7e-08 64.3 49 61.2
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 3.0e-07 61.6 105 50.5


User provided reference genes

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