Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 0.0e+00 1184.1 768 100.0
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 5.3e-238 828.2 790 69.5
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 3.6e-210 735.7 776 68.7
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 4.4e-184 649.0 777 63.2
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 3.6e-170 602.8 800 54.2
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 1.8e-169 600.5 782 60.1
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 5.4e-166 589.0 832 52.8
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 1.0e-164 584.7 795 56.0
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 3.3e-163 579.7 827 54.3
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 7.3e-163 578.6 783 60.9
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 6.8e-161 572.0 782 58.3
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 3.4e-160 569.7 779 57.3
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.9e-159 565.8 779 57.1
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.6e-154 550.8 780 58.8
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 2.1e-154 550.4 782 61.5
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.8e-154 549.3 790 56.8
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 6.9e-153 545.4 808 54.5
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 7.6e-152 542.0 809 54.3
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.6e-149 534.3 766 57.7
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 2.7e-149 533.5 787 56.7
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 3.9e-148 529.6 778 57.8
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.5e-147 526.9 838 56.4
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 7.3e-147 525.4 779 53.7
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.3e-146 524.6 832 54.8
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 2.8e-146 523.5 793 55.0
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 4.8e-146 522.7 782 56.9
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 4.8e-146 522.7 515 61.2
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 5.3e-145 519.2 728 56.9
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 6.4e-143 512.3 513 59.6
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 1.1e-142 511.5 756 55.2
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 2.1e-141 507.3 818 49.9
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 7.9e-141 505.4 796 54.6
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.5e-139 501.1 796 51.0
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.3e-138 498.0 516 58.9
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 3.1e-137 493.4 512 58.8
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 2.2e-135 487.3 509 58.7
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.9e-135 486.1 788 54.2
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 4.6e-133 479.6 821 55.3
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 7.9e-133 478.8 775 56.6
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.6e-130 471.1 807 55.6
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 1.3e-127 461.5 784 50.3
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 3.2e-126 456.8 808 46.0
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 3.9e-124 449.9 775 52.4
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 8.7e-124 448.7 779 54.8
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 9.7e-123 445.3 683 50.1
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 6.3e-122 442.6 793 48.0
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 2.6e-120 437.2 559 50.3
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 2.6e-120 437.2 797 53.1
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 4.5e-120 436.4 425 60.7
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 2.7e-117 427.2 418 61.0
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 7.4e-115 419.1 771 48.9
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 9.7e-115 418.7 831 48.1
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 6.3e-114 416.0 778 47.8
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.4e-113 414.8 503 51.9
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 9.1e-113 412.1 756 51.7
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.0e-111 408.7 558 48.6
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.0e-111 408.7 829 47.4
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 1.4e-110 404.8 623 47.0
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 5.5e-110 402.9 808 44.8
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 1.6e-109 401.4 620 60.3
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 5.1e-108 396.4 587 46.7
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 8.8e-108 395.6 828 47.6
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 3.3e-107 393.7 523 49.7
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 9.7e-107 392.1 771 49.7
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 2.8e-106 390.6 827 47.2
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 6.3e-106 389.4 805 42.5
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.8e-103 380.2 500 48.6
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 1.1e-102 378.6 655 49.8
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 2.3e-100 370.9 809 45.0
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.1e-99 368.6 839 44.1
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 1.1e-94 352.1 825 44.7
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.6e-93 348.2 359 54.9
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 1.3e-90 338.6 524 42.7
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 5.5e-86 323.2 520 44.4
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 2.1e-85 321.2 521 43.6
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 1.8e-84 318.2 577 43.5
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 9.8e-83 312.4 523 44.4
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 1.4e-81 308.5 517 44.9
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.8e-81 308.1 630 40.6
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 2.4e-81 307.8 497 43.9
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 3.1e-81 307.4 544 41.2
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 3.1e-81 307.4 522 44.6
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 5.4e-81 306.6 517 44.5
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 5.4e-81 306.6 502 42.4
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 7.0e-81 306.2 526 43.5
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 1.6e-80 305.1 518 45.2
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 5.9e-80 303.1 519 42.2
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 1.5e-78 298.5 572 40.6
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 4.3e-70 270.4 647 35.9
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 2.1e-69 268.1 811 37.7
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 4.7e-69 266.9 572 41.4
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 5.8e-67 260.0 495 41.0
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.3e-63 248.1 672 45.5
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 8.9e-60 236.1 241 57.3
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 2.2e-58 231.5 557 35.5
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 8.3e-58 229.6 474 36.7
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 9.2e-57 226.1 610 33.0
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 9.6e-46 189.5 284 45.1
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 5.2e-44 183.7 534 33.9
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 6.9e-36 156.8 561 29.4
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.9e-34 150.6 186 52.2
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 8.4e-26 123.2 831 28.8
Cpa.g.c37452 Carica papaya HOM05D006512 ORTHO05D008027 1.5e-14 85.9 67 70.1
Nn6g32350 Nelumbo nucifera HOM05D006512 ORTHO05D008027 2.6e-11 75.1 163 40.5
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-11 74.3 131 31.3
Actinidia32261 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.1e-08 65.5 49 65.3
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 2.7e-08 65.1 130 37.7
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.0e-07 61.6 102 31.4
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 5.1e-07 60.8 117 30.8
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 6.7e-07 60.5 111 30.6
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 8.7e-07 60.1 102 30.4
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 8.7e-07 60.1 102 30.4
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 1.1e-06 59.7 97 30.9
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 1.1e-06 59.7 97 30.9
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 1.1e-06 59.7 152 25.0
A08p31890 Brassica napus HOM05D002594 ORTHO05D003499 1.5e-06 59.3 100 33.0
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 1.5e-06 59.3 97 30.9
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 1.9e-06 58.9 100 33.0
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 1.9e-06 58.9 101 30.7
Cpa.g.sc1346.3 Carica papaya HOM05D002594 ORTHO05D003499 1.9e-06 58.9 102 32.4
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 2.5e-06 58.5 61 37.7
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 2.5e-06 58.5 84 36.9
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 2.5e-06 58.5 84 36.9
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 2.5e-06 58.5 111 29.7
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 2.5e-06 58.5 78 33.3
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 3.3e-06 58.2 99 33.3
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 4.3e-06 57.8 61 37.7
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 4.3e-06 57.8 59 39.0
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 4.3e-06 57.8 75 33.3
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 5.7e-06 57.4 84 34.5
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 5.7e-06 57.4 107 29.0
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 5.7e-06 57.4 78 32.1
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 7.4e-06 57.0 53 41.5
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 7.4e-06 57.0 78 33.3
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 7.4e-06 57.0 61 39.3
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 7.4e-06 57.0 89 31.5
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 7.4e-06 57.0 78 33.3
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 7.4e-06 57.0 78 33.3
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 7.4e-06 57.0 78 33.3
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 9.7e-06 56.6 59 39.0
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 9.7e-06 56.6 99 31.3
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 9.7e-06 56.6 100 31.0
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 9.7e-06 56.6 75 36.0
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 9.7e-06 56.6 100 31.0
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 9.7e-06 56.6 100 31.0
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 9.7e-06 56.6 84 34.5
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 9.7e-06 56.6 101 32.7
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 9.7e-06 56.6 72 36.1
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 9.7e-06 56.6 100 31.0
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 9.7e-06 56.6 96 31.2
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 9.7e-06 56.6 55 38.2
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 9.7e-06 56.6 103 32.0
SMO116G0104 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 9.7e-06 56.6 61 37.7


User provided reference genes

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