Gene: AT5G55100

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G55100
  • Transcript Identifier AT5G55100.6
  • Gene Type Coding gene
  • Location Chr5 : 22361401-22363503 : negative

Gene Family Information

  • ID HOM05D006512
  • #Genes/#Species 123/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G55100.6
  • uniprot Q94BN8

Descriptions

  • Description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
  • Computational description SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 37493 Blast hits to 21004 proteins in 1134 species: Archae - 58; Bacteria - 2223; Metazoa - 18747; Fungi - 3374; Plants - 2679; Viruses - 122; Other Eukaryotes - 10290 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000395
IBA
Gene OntologymRNA 5'-splice site recognition1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035967 SWAP/Surp superfamily
IPR000061 SWAP/Surp
IPR040397 Suppressor of white apricot
Mapman id Description
35.1 not assigned.annotated