Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 0.0e+00 1288.5 663 100.0
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 3.3e-260 901.7 664 71.7
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.6e-251 872.8 663 71.3
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 2.6e-241 839.0 663 67.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 5.1e-237 824.7 726 63.5
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.8e-227 792.3 663 64.9
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 6.2e-227 791.2 661 64.3
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 6.9e-218 761.1 735 57.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.8e-216 755.4 719 58.4
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.8e-213 746.5 694 58.9
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.5e-212 743.4 708 59.2
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 6.2e-211 738.0 708 58.8
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 1.8e-210 736.5 666 62.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 6.9e-210 734.6 663 60.5
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.5e-209 733.4 696 57.6
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 7.6e-209 731.1 693 59.3
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 4.9e-208 728.4 712 57.6
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 6.4e-208 728.0 706 58.9
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.5e-207 724.9 664 61.6
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 6.0e-206 721.5 667 58.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.0e-205 719.2 706 57.2
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 5.1e-205 718.4 671 59.5
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.9e-204 716.5 639 61.3
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.1e-202 710.7 718 56.3
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 3.1e-202 709.1 717 56.2
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.2e-201 707.2 667 59.8
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.5e-201 706.8 713 55.3
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.3e-200 703.7 695 57.8
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.5e-199 699.5 712 56.0
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 4.2e-199 698.7 705 55.6
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 4.2e-199 698.7 719 56.1
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 1.2e-198 697.2 708 56.5
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.2e-198 697.2 713 55.0
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 4.6e-198 695.3 668 58.5
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.3e-197 693.0 673 57.9
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 5.1e-197 691.8 667 58.0
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.4e-194 683.7 651 57.8
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 3.1e-194 682.6 674 56.7
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.1e-194 682.2 706 55.9
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.5e-193 680.2 714 54.1
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 2.0e-193 679.9 670 57.9
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 5.9e-193 678.3 706 53.1
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 5.9e-193 678.3 704 55.0
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 7.6e-193 677.9 673 58.5
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.8e-187 658.7 664 56.6
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.1e-186 657.5 763 51.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 6.9e-186 654.8 673 56.0
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 5.9e-185 651.7 712 53.9
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-184 650.6 669 56.7
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.7e-184 650.2 673 56.3
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.2e-184 649.8 717 53.6
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.9e-184 649.4 669 55.2
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.4e-183 647.1 669 56.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.4e-183 647.1 716 52.2
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 4.2e-183 645.6 668 53.0
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.3e-180 636.0 794 48.4
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.7e-179 633.6 671 53.5
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 8.2e-179 631.3 724 52.2
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 3.1e-178 629.4 656 55.9
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 2.0e-177 626.7 664 52.9
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.0e-177 626.7 671 54.1
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 4.5e-177 625.5 675 53.6
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.7e-174 616.3 767 48.6
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.3e-173 613.2 734 50.7
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 3.9e-173 612.5 669 52.2
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 5.2e-173 612.1 667 53.1
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.4e-172 609.0 765 48.8
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 9.7e-172 607.8 737 49.1
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 3.7e-171 605.9 730 49.0
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 4.1e-170 602.4 663 51.6
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 3.5e-169 599.4 670 52.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.5e-169 599.0 667 52.0
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 7.7e-169 598.2 704 50.4
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.2e-167 592.8 729 49.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.2e-166 590.9 729 49.2
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.8e-165 587.0 578 57.1
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-157 560.5 729 47.5
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 6.8e-157 558.5 734 46.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.7e-155 553.9 736 45.1
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.8e-154 550.4 735 45.9
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 5.5e-151 538.9 732 44.1
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 7.2e-151 538.5 757 46.0
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.5e-151 538.1 705 48.1
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 6.1e-150 535.4 617 51.7
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.4e-149 534.3 716 44.7
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 5.2e-149 532.3 762 43.7
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 4.3e-143 512.7 679 45.9
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.8e-141 507.3 858 40.2
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 2.2e-139 500.4 475 60.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.9e-139 499.2 665 46.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 3.2e-138 496.5 659 45.4
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.0e-137 493.8 686 44.6
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 4.3e-135 486.1 632 47.9
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.4e-133 481.1 660 44.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-133 480.7 708 44.5
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.1e-127 461.5 503 53.3
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.8e-124 449.1 823 37.8
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 9.9e-124 448.4 857 37.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 9.9e-124 448.4 829 37.4
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 4.9e-123 446.0 853 37.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.9e-120 436.4 661 42.7
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.2e-110 402.5 824 36.5
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.3e-102 378.3 724 37.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 6.2e-102 375.9 651 39.5
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.9e-101 372.5 679 39.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 5.8e-100 369.4 676 39.1
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 6.0e-97 359.4 674 38.6
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.8e-94 350.5 670 38.7
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 3.9e-80 303.5 349 51.9
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.5e-76 291.6 645 36.6
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.3e-72 277.7 344 48.8
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 8.8e-72 275.8 623 36.0
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 4.5e-68 263.5 722 29.4
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-63 248.4 277 50.2
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.1e-57 228.0 315 45.1
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 2.7e-57 227.6 683 28.3
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.8e-56 224.9 886 27.4
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 3.3e-55 220.7 194 57.2
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.8e-45 188.3 677 26.1
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.0e-43 180.3 174 51.7
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 5.0e-43 180.3 174 51.7
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 3.0e-40 171.0 126 68.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 3.7e-38 164.1 500 29.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.2e-36 159.1 135 65.9
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 7.2e-34 149.8 210 40.0
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 9.5e-34 149.4 81 88.9
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 4.4e-31 140.6 241 41.1
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-23 115.5 103 55.3
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.2e-20 105.9 96 56.2
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 4.0e-16 90.9 129 40.3
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 3.4e-15 87.8 155 41.9
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.4e-15 87.8 113 44.2
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 3.7e-14 84.3 94 55.3
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 6.8e-08 63.5 54 57.4
QL11p025867 Quercus lobata HOM05D000949 ORTHO05D001276 1.5e-07 62.4 39 82.1


User provided reference genes

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