Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.2e-207 726.5 419 100.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.2e-207 726.5 419 100.0
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.6e-154 549.3 420 75.2
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.1e-152 543.9 421 77.4
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 6.0e-151 538.1 420 75.2
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 6.2e-148 528.1 422 76.8
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 6.4e-129 464.9 451 61.0
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 5.4e-128 461.8 432 64.4
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 9.3e-128 461.1 439 63.8
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 2.8e-124 449.5 461 58.8
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.3e-123 445.3 433 61.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.6e-122 443.0 419 63.5
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 8.4e-121 438.0 436 62.6
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.1e-120 437.6 468 60.3
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.2e-120 435.6 423 60.8
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 6.0e-119 431.8 460 62.6
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 6.0e-119 431.8 462 59.3
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.3e-118 429.9 442 61.3
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 8.7e-118 427.9 436 62.4
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.5e-117 426.4 463 57.0
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 7.4e-117 424.9 428 61.2
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.6e-116 423.7 428 60.5
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 4.8e-116 422.2 435 59.8
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.2e-116 421.8 434 62.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 5.3e-115 418.7 494 54.7
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 9.0e-115 417.9 464 56.9
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 5.8e-114 415.2 449 57.5
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.2e-113 413.3 501 54.1
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 4.9e-113 412.1 462 57.6
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.9e-113 412.1 442 59.7
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 6.5e-113 411.8 424 58.5
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 6.5e-113 411.8 441 57.8
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.7e-111 406.4 472 56.8
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.7e-111 406.4 425 59.8
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 3.5e-111 406.0 462 55.8
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 3.0e-110 402.9 526 51.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.0e-110 402.9 499 52.7
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 3.9e-110 402.5 440 60.9
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 3.9e-110 402.5 454 57.5
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 6.7e-110 401.7 437 56.5
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 6.7e-110 401.7 420 59.3
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 8.7e-110 401.4 468 54.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.1e-109 401.0 456 57.9
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.1e-109 401.0 429 59.4
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.5e-109 400.6 482 52.5
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.5e-109 400.6 464 58.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 5.7e-109 398.7 482 52.1
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.7e-109 397.9 457 55.6
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 2.2e-108 396.7 496 51.4
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.7e-108 396.0 483 55.3
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.8e-108 395.6 428 59.1
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.1e-107 394.4 419 57.5
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.8e-107 393.7 463 58.7
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.4e-107 393.3 462 53.7
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 6.9e-107 391.7 476 51.9
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.2e-106 391.0 430 55.8
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.4e-106 389.4 438 57.1
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.6e-106 388.3 451 59.6
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.3e-105 387.5 455 55.6
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.9e-105 386.3 455 54.7
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 3.8e-105 386.0 443 56.7
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 5.0e-105 385.6 439 55.8
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 6.5e-105 385.2 464 55.0
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.1e-104 384.4 451 53.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.4e-104 384.0 450 54.0
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 5.5e-104 382.1 452 53.1
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 7.2e-104 381.7 448 56.7
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.2e-103 380.9 455 54.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.6e-103 380.6 426 57.3
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.1e-103 380.2 446 53.8
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.7e-103 379.8 446 56.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 4.6e-103 379.0 436 56.7
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.0e-102 377.9 440 57.0
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 8.7e-102 374.8 463 52.7
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.1e-101 374.4 448 55.1
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 9.7e-101 371.3 480 50.0
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.1e-99 365.9 454 51.8
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.5e-98 362.5 432 56.7
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.8e-97 359.4 390 60.3
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 6.5e-97 358.6 451 56.5
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 2.5e-96 356.7 464 54.7
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 9.4e-96 354.8 452 49.3
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 7.9e-95 351.7 459 52.3
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 7.9e-95 351.7 438 55.7
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.3e-94 350.1 493 48.9
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 8.8e-94 348.2 433 53.6
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.1e-93 347.8 442 56.3
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 7.4e-93 345.1 423 55.1
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 9.7e-93 344.7 468 50.9
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.2e-92 343.6 464 52.6
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.2e-92 343.6 443 55.1
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.2e-92 343.6 454 50.7
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.7e-92 342.8 455 56.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 8.2e-92 341.7 452 53.3
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 5.3e-91 339.0 445 50.1
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 9.1e-91 338.2 435 51.0
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.5e-90 337.4 445 53.5
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 4.5e-90 335.9 453 50.8
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 7.7e-90 335.1 450 50.0
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.0e-89 334.7 449 51.7
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.7e-89 334.0 456 55.0
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 8.5e-89 331.6 457 53.6
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.1e-88 331.3 237 73.4
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.9e-88 330.5 420 51.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.2e-88 329.7 445 53.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.2e-88 329.7 428 52.1
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 7.2e-88 328.6 404 53.2
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.7e-87 326.6 447 51.7
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 4.7e-87 325.9 447 53.9
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.0e-87 325.1 451 51.4
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 8.0e-87 325.1 470 51.9
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.0e-86 324.7 436 51.1
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.0e-86 324.7 458 47.6
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.4e-86 324.3 452 48.0
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.4e-86 324.3 439 49.2
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 3.9e-86 322.8 447 49.4
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 6.7e-86 322.0 479 47.0
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 8.8e-86 321.6 447 49.2
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.5e-85 320.9 436 55.0
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.0e-85 320.5 457 47.7
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.3e-84 317.8 456 50.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.2e-84 317.0 486 48.8
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 6.3e-84 315.5 443 49.0
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 6.3e-84 315.5 443 49.0
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 6.3e-84 315.5 443 49.0
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 4.1e-83 312.8 478 46.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.0e-82 310.5 436 52.1
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.5e-81 305.4 445 49.4
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.6e-79 300.8 382 52.1
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.7e-79 300.1 440 49.3
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 3.6e-79 299.7 426 51.4
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.7e-79 299.3 456 46.1
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.4e-78 297.7 416 50.2
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.3e-78 297.0 399 49.1
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 8.8e-78 295.0 426 50.2
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 7.5e-77 292.0 428 47.7
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-76 291.2 448 47.3
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 4.8e-76 289.3 486 49.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.6e-74 284.3 488 44.9
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.6e-69 266.9 463 42.8
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.7e-63 246.1 463 43.6
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.8e-62 244.2 457 42.0
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-60 236.5 423 43.0
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.7e-60 236.5 423 43.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 4.9e-60 236.1 429 44.1
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-59 235.0 423 42.8
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 7.8e-58 228.8 339 49.0
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.3e-57 227.3 479 38.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.3e-52 211.5 465 40.2
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.7e-52 211.1 427 42.4
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 7.8e-50 202.2 158 71.5
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 7.8e-50 202.2 340 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.3e-49 200.7 453 41.7
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 9.2e-43 178.7 426 37.6
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 7.8e-42 175.6 466 37.6
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-39 167.9 171 56.7
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 9.2e-35 152.1 341 38.4
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 8.6e-33 145.6 86 82.6
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.4e-27 128.3 103 69.9
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.0e-25 122.1 132 57.6
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-21 108.6 126 54.8
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.2e-21 108.6 126 54.8
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 9.9e-21 105.5 89 67.4
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 4.9e-20 103.2 483 28.8
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 3.2e-19 100.5 113 57.5
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.1e-16 92.0 131 51.1
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 4.8e-15 86.7 98 55.1
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 8.1e-15 85.9 67 64.2
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.4e-14 84.3 322 30.1
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 4.5e-13 80.1 248 28.6
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 7.1e-11 72.8 134 39.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.2e-10 72.0 134 39.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-10 71.6 416 27.4
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.8e-09 68.2 122 38.5
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.3e-09 67.8 41 87.8
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.0e-09 67.4 125 40.0
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 5.1e-09 66.6 64 54.7
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 2.8e-07 60.8 135 35.6
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 3.1e-06 57.4 122 33.6
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.0e-06 57.0 135 33.3


User provided reference genes

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