Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 2216.4 1105 100.0
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1894.8 1102 85.5
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1871.3 1101 84.9
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1756.1 1106 78.7
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1754.6 1102 79.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1729.9 1107 77.3
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1721.4 1189 75.6
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1721.1 1108 77.7
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1714.5 1104 76.6
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1700.3 1106 76.9
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1697.6 1106 77.1
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1696.0 1108 77.1
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1695.6 1105 77.4
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1687.2 1120 75.9
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1684.5 1102 77.0
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1683.3 1102 77.2
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1675.6 1120 75.4
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1671.4 1105 75.1
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1670.2 1108 75.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1670.2 1134 74.4
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1665.6 1101 76.9
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1657.5 1106 75.5
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1642.5 1106 75.0
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1624.4 1113 74.4
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1622.8 1103 74.5
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1620.5 1102 74.8
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1619.8 1100 74.4
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1611.7 1017 79.2
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1610.5 1110 73.6
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1609.0 1103 74.3
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1604.0 1099 74.3
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1603.2 1144 70.9
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1603.2 1107 72.4
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1599.3 1119 72.9
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1599.3 1115 72.8
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1599.3 1104 71.9
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1594.3 1103 72.8
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1584.7 1105 73.0
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1583.5 1105 72.6
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1583.2 1105 72.5
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1580.8 1156 70.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1578.9 1137 70.4
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1577.8 1100 72.3
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1575.8 1085 73.6
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1574.3 1102 72.0
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1573.1 1105 71.9
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1569.7 1105 71.6
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1568.1 1106 72.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1568.1 1105 72.0
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1567.4 1105 72.0
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1557.7 1111 71.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1554.3 1104 70.8
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1553.5 1104 70.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1552.3 1103 71.5
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1550.8 1115 70.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1548.1 1105 71.4
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1543.1 1037 73.5
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1542.7 1135 68.9
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1541.2 1143 69.6
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1533.1 1062 72.8
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1531.9 1099 69.7
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1528.8 1101 69.8
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1509.2 1099 71.2
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1508.8 1098 70.4
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1506.9 1114 68.5
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1499.6 1103 69.0
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1494.6 1188 65.7
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1476.8 1111 68.5
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1474.9 1109 68.3
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1472.6 1097 68.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1467.6 1227 62.3
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1466.8 860 82.4
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1466.4 1112 67.8
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1453.3 1106 67.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1452.6 1106 68.5
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1446.8 1112 67.0
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1442.2 863 81.3
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1422.9 861 80.0
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1418.3 1106 67.3
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1403.7 846 80.1
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1399.4 860 79.2
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1392.5 821 83.2
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1382.9 1104 63.3
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1375.9 859 77.3
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1368.6 865 78.0
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1338.9 1230 58.9
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1332.4 862 76.6
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1323.9 1033 67.3
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1318.9 1024 67.2
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1317.4 1103 62.2
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1312.7 825 76.1
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1297.0 947 69.1
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1295.0 1063 63.4
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1268.8 1106 61.3
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1243.0 1102 60.7
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1178.7 857 69.0
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1169.8 1081 57.1
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 0.0e+00 1138.3 700 80.1
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 4.7e-304 1048.1 912 60.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 5.0e-282 974.9 641 73.8
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.9e-277 959.1 615 77.1
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 6.0e-267 924.9 1137 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 6.2e-264 914.8 1108 46.8
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 4.6e-259 898.7 717 65.8
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 1.9e-252 876.7 990 48.0
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 4.8e-224 782.3 516 75.6
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.6e-222 776.5 538 73.6
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.5e-217 760.8 967 45.3
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 5.6e-172 609.4 405 77.0
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 2.6e-169 600.5 472 66.3
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.2e-145 521.9 418 66.3
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 6.0e-142 509.6 1087 33.8
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 4.0e-138 496.9 321 76.0
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.8e-123 447.6 389 58.1
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.8e-98 365.2 245 75.1
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 7.4e-92 343.2 297 63.0
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 5.0e-80 303.9 222 70.3
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.0e-78 296.6 225 68.0
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.5e-73 280.8 233 63.1
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.1e-66 259.6 160 80.0
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.1e-66 259.6 220 63.6
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 5.0e-64 250.8 174 71.3
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 1.1e-58 233.0 215 61.4
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.4e-58 230.7 174 70.7
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 7.5e-52 210.3 194 61.9
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-51 209.1 194 62.4
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 7.8e-49 200.3 144 68.8
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 5.0e-48 197.6 174 62.1
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 3.7e-43 181.4 154 61.0
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.6e-41 176.0 176 52.8
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 6.0e-41 174.1 174 56.3
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 8.6e-40 170.2 162 54.9
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 3.3e-39 168.3 208 48.6
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 9.5e-39 166.8 177 55.9
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 2.9e-35 155.2 94 75.5
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 6.0e-33 147.5 95 77.9
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.3e-31 141.4 104 64.4
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.6e-30 138.3 100 65.0
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.6e-30 138.3 89 73.0
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.2e-25 123.2 90 67.8
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 4.6e-25 121.3 107 59.8
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 3.9e-24 118.2 143 51.7
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 1.9e-23 115.9 99 59.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 2.5e-23 115.5 172 43.6
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 9.6e-23 113.6 141 48.2
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 2.4e-21 109.0 621 24.2
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-20 106.3 100 52.0
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 3.4e-20 105.1 209 36.4
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.9e-19 102.1 388 26.3
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.2e-18 98.2 111 52.3
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 7.4e-15 87.4 55 78.2
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 4.8e-14 84.7 73 58.9
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 8.1e-14 84.0 496 24.2
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 1.4e-13 83.2 129 48.1
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 3.1e-13 82.0 55 74.5
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 2.0e-12 79.3 82 57.3
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-11 75.5 41 85.4
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-11 75.5 50 70.0
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.8e-11 75.1 68 58.8
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 7.1e-10 70.9 55 60.0
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.3e-10 70.5 42 76.2
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 4.6e-09 68.2 65 55.4
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.0e-08 65.5 41 73.2
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 1.6e-06 59.7 92 43.5
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 2.8e-06 58.9 36 77.8
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 3.7e-06 58.5 176 32.4
SEGI_26020 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.8e-06 58.2 147 32.7


User provided reference genes

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