Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 0.0e+00 1315.8 664 100.0
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 5.9e-286 987.3 704 73.9
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 5.7e-281 970.7 678 74.2
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 7.0e-279 963.8 670 75.2
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.6e-278 962.6 678 75.1
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.2e-270 936.4 675 71.4
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.5e-268 928.7 676 71.7
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 3.7e-264 914.8 676 70.9
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 3.5e-262 908.3 671 70.0
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 1.3e-261 906.4 678 70.1
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 2.5e-260 902.1 673 69.7
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 3.6e-259 898.3 672 68.5
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.9e-255 885.9 713 65.4
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 8.6e-253 877.1 673 68.8
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.1e-252 876.7 673 67.6
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 3.3e-252 875.2 670 68.4
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.1e-250 870.2 667 68.1
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 2.3e-250 869.0 670 67.6
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.5e-249 866.3 603 74.5
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 4.9e-248 861.3 666 67.3
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 8.3e-248 860.5 666 67.9
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.4e-247 859.8 673 67.9
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.3e-245 852.4 677 66.3
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 3.0e-245 852.0 668 66.2
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 6.6e-245 850.9 667 66.9
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 6.6e-245 850.9 666 66.8
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.6e-245 850.5 677 66.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 2.1e-243 845.9 668 66.8
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.8e-243 845.5 675 67.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 9.9e-241 837.0 678 65.6
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-240 836.6 698 64.2
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 2.7e-238 828.9 697 62.8
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.1e-237 824.7 729 61.0
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.5e-236 822.4 661 65.8
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.6e-235 819.7 685 63.8
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.1e-234 817.0 671 62.4
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 3.5e-230 802.0 668 64.4
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.0e-229 800.4 670 63.1
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.5e-228 796.6 678 61.8
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.5e-228 795.8 693 60.9
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.1e-227 792.7 674 62.5
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 2.4e-226 789.3 636 66.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 4.0e-226 788.5 597 69.0
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 3.2e-223 778.9 702 61.0
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 5.3e-218 761.5 668 62.3
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.5e-217 760.0 676 60.7
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 3.4e-217 758.8 665 61.1
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 3.4e-217 758.8 836 53.1
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 3.8e-216 755.4 671 60.4
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 7.1e-215 751.1 733 56.6
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 2.7e-214 749.2 698 58.6
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.5e-212 743.4 682 58.9
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.5e-212 742.7 703 57.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.3e-212 742.3 670 60.6
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.8e-211 738.4 670 58.8
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.2e-209 733.8 676 59.9
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 4.5e-209 731.9 681 58.1
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.3e-208 730.3 667 59.2
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.2e-208 729.6 667 59.2
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 2.7e-206 722.6 667 57.7
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 3.0e-205 719.2 670 58.8
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.1e-204 717.2 667 59.2
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 9.6e-204 714.1 654 58.9
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.3e-203 713.8 667 58.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.3e-203 713.8 667 58.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.3e-203 713.8 667 58.3
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.2e-201 707.2 671 56.5
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 3.8e-192 675.6 665 57.4
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 3.0e-189 666.0 607 60.1
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.5e-188 662.9 666 53.8
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 7.4e-188 661.4 527 67.4
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.8e-186 656.8 664 53.3
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 5.9e-185 651.7 588 59.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.3e-184 650.6 669 54.3
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 9.4e-183 644.4 606 57.6
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 6.1e-182 641.7 596 59.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 4.5e-177 625.5 661 52.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.2e-176 623.2 578 60.0
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 3.8e-176 622.5 661 52.5
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.0e-173 614.4 661 52.5
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.6e-172 609.8 661 53.0
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 4.4e-172 609.0 662 51.5
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.7e-171 607.1 662 52.4
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.7e-168 597.0 497 63.8
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.2e-166 590.9 491 62.9
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 8.0e-166 588.2 673 49.8
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.2e-164 584.3 635 50.1
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-162 576.6 574 56.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.1e-159 567.8 673 48.3
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 8.0e-158 561.6 659 48.6
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 8.0e-158 561.6 663 47.8
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 8.6e-152 541.6 592 52.7
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.2e-139 500.4 527 53.3
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.4e-130 470.3 458 56.3
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.0e-128 463.4 646 45.7
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.1e-127 461.5 675 41.2
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 9.2e-122 441.8 671 39.9
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 5.1e-120 436.0 675 40.6
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.8e-117 427.6 766 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 1.3e-115 421.4 670 38.1
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 4.9e-115 419.5 555 44.3
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.3e-103 380.2 456 48.2
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 7.4e-95 352.4 461 48.6
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 4.0e-93 346.7 223 77.6
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.5e-92 344.7 550 40.2
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.8e-91 340.1 276 64.9
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.2e-89 335.1 222 74.3
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.2e-89 335.1 512 41.6
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.1e-81 307.8 911 29.1
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 4.6e-81 306.6 285 58.2
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 2.3e-80 304.3 417 46.5
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.2e-73 282.0 308 53.9
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.7e-63 246.5 169 71.6
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.3e-61 240.0 167 71.3
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.9e-58 231.5 163 70.6
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.0e-56 225.7 135 83.0
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.4e-56 225.3 145 77.2
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.3e-56 224.6 174 66.1
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.7e-54 218.4 165 69.7
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.1e-53 215.7 151 74.2
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.5e-50 203.4 358 39.7
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.8e-48 196.4 173 54.9
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.8e-45 188.3 160 61.2
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 5.4e-45 186.8 177 58.8
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 7.2e-42 176.4 132 66.7
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 7.2e-42 176.4 142 63.4
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 6.3e-38 163.3 145 59.3
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 8.3e-38 162.9 133 63.9
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 2.7e-36 157.9 670 26.6
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.9e-35 154.5 122 62.3
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 7.3e-34 149.8 163 50.9
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.8e-32 145.2 277 37.5
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 5.2e-32 143.7 307 32.9
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 8.3e-30 136.3 101 64.4
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 8.6e-27 126.3 149 49.0
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.2e-25 122.5 158 45.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 2.1e-25 121.7 274 31.0
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.2e-22 111.7 150 45.3
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.2e-21 107.8 90 63.3
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.2e-20 105.9 174 37.4
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.9e-18 98.6 54 81.5
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 1.6e-17 95.5 54 79.6
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 6.8e-16 90.1 107 50.5
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.2e-15 89.4 107 50.5
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 7.5e-15 86.7 52 76.9
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 2.9e-14 84.7 80 52.5
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.7e-11 75.5 64 56.2
SHI03977 Sapria himalayana HOM05D004944 ORTHO05D005989 4.9e-06 57.4 118 36.4


User provided reference genes

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