Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 0.0e+00 1438.3 732 100.0
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 0.0e+00 1435.6 732 99.7
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.9e-294 1015.0 739 71.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.2e-276 956.4 872 61.0
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.2e-248 862.1 596 75.8
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.0e-230 802.4 746 56.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.3e-229 798.5 736 58.0
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.0e-227 792.0 751 57.3
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.0e-227 792.0 740 57.7
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.4e-226 788.5 741 57.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.9e-225 785.8 743 56.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.3e-222 776.9 720 58.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.8e-220 769.2 765 55.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.9e-217 759.2 749 56.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 6.4e-217 758.1 744 56.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.1e-216 754.6 739 55.8
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 9.3e-216 754.2 750 54.9
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 7.8e-215 751.1 744 55.1
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.9e-213 746.5 735 54.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.5e-213 746.1 771 54.9
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 9.6e-213 744.2 748 57.5
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 6.9e-211 738.0 741 54.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 9.0e-211 737.6 771 54.2
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.4e-210 735.7 736 53.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 7.6e-210 734.6 771 54.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.3e-206 723.8 745 54.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.3e-206 723.8 738 54.1
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 8.7e-206 721.1 757 53.1
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.3e-204 717.2 753 51.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.8e-204 715.3 771 53.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.3e-201 707.2 737 52.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.5e-200 703.0 745 53.3
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 4.2e-200 702.2 750 53.1
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.2e-199 700.7 745 51.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.5e-199 699.1 741 52.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.5e-199 699.1 709 56.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.9e-198 695.7 759 51.0
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 8.7e-198 694.5 759 50.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-197 693.0 759 50.9
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.6e-194 682.9 717 51.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.7e-193 680.2 743 52.1
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.4e-192 677.2 719 54.5
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.1e-191 673.3 739 50.2
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.1e-190 668.7 734 53.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.4e-189 664.8 748 50.4
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.1e-187 661.0 635 58.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.6e-186 656.4 732 50.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.1e-184 651.0 709 52.0
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.3e-182 643.3 733 50.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.1e-179 632.5 745 49.0
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.5e-178 629.0 720 49.2
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.4e-173 611.7 747 47.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.5e-170 604.0 742 48.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 3.5e-170 602.8 725 48.7
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.9e-170 602.1 747 47.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.4e-168 597.4 741 47.2
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.4e-168 597.4 735 46.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.9e-168 597.0 754 46.7
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.6e-167 594.0 711 47.1
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.1e-167 593.6 719 47.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.0e-166 591.3 726 47.9
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.1e-165 587.8 714 47.6
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.0e-165 587.0 712 47.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 5.7e-165 585.5 565 57.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.7e-164 583.9 720 46.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.2e-164 581.6 717 47.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.8e-163 580.5 798 44.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.1e-163 579.3 565 57.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 7.0e-163 578.6 739 45.5
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 7.0e-163 578.6 721 47.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.2e-162 577.8 528 59.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.6e-162 576.6 709 46.8
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 7.7e-162 575.1 720 46.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.6e-159 566.2 728 45.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.2e-156 557.0 730 44.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.7e-156 556.2 754 43.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 4.1e-155 552.7 723 44.3
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.8e-153 546.2 730 44.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-152 544.7 741 44.7
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.9e-152 543.9 722 45.8
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.6e-151 539.7 753 43.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.3e-150 537.0 734 43.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.0e-150 536.2 724 44.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 8.3e-148 528.5 713 44.2
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.4e-147 526.9 710 47.0
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.0e-147 525.4 688 46.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.0e-147 525.4 713 44.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 7.7e-146 521.9 752 42.4
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.9e-144 517.3 730 42.9
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.2e-144 515.4 734 42.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.6e-143 514.2 430 62.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.9e-138 495.7 736 42.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.7e-137 494.2 471 57.7
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 8.9e-134 481.9 433 55.9
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 7.5e-133 478.8 507 52.9
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.4e-131 474.6 742 41.4
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.4e-131 472.6 732 39.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.5e-128 464.5 731 41.2
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.9e-128 464.2 728 40.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.9e-128 464.2 714 40.9
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 5.6e-128 462.6 728 39.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 7.3e-128 462.2 725 41.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.2e-127 461.5 691 39.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.0e-126 456.4 725 40.1
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.9e-124 449.5 718 39.1
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.1e-122 444.1 580 47.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 9.5e-120 435.3 432 55.1
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.6e-119 434.5 704 39.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.1e-119 434.1 683 39.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.2e-117 428.3 721 38.3
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.5e-114 416.8 543 47.5
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.0e-109 401.0 371 59.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-108 398.3 610 41.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.0e-105 388.7 738 34.8
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.1e-103 379.0 733 35.6
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 9.0e-102 375.6 741 35.6
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.6e-101 372.5 502 44.0
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.4e-100 369.0 380 52.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.3e-96 357.1 592 37.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 5.4e-91 339.7 305 58.7
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 6.7e-81 306.2 379 45.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.3e-80 303.9 404 44.1
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-78 298.9 552 37.3
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.2e-68 264.6 724 28.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.5e-61 241.9 397 40.8
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 5.9e-61 240.0 639 29.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.8e-57 228.4 627 27.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.0e-56 224.9 164 65.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.2e-47 194.9 142 64.1
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-45 189.1 122 73.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.9e-45 186.8 237 45.1
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 4.2e-43 180.6 122 71.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.7e-42 177.9 262 45.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.7e-42 177.2 246 44.7
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 4.0e-41 174.1 205 43.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.0e-40 171.8 279 36.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-37 162.2 577 25.3
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.5e-37 161.0 515 27.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 7.7e-37 159.8 482 28.8
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.5e-29 134.4 113 56.6
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.9e-25 119.8 333 31.2
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.3e-23 115.9 147 40.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-22 112.8 211 34.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 4.6e-21 107.5 154 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.7e-20 105.5 193 31.1
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 4.7e-18 97.4 61 78.7
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-17 95.5 61 80.3
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 7.5e-16 90.1 72 56.9
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.2e-15 88.6 190 30.0
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.4e-14 85.1 144 38.2
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.3e-12 79.3 345 26.1
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-12 79.3 174 32.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.3e-12 78.6 82 50.0
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.1e-10 72.0 59 57.6
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.8e-10 71.6 76 48.7
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.2e-10 70.5 65 60.0
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.1e-09 69.7 84 42.9
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.4e-09 69.3 239 28.5
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-09 68.6 244 27.5
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 1.9e-06 58.9 426 20.7
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.2e-06 58.2 90 37.8
SEGI_17983 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 9.2e-06 56.6 72 34.7


User provided reference genes

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