Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p060281 Quercus lobata HOM05D001937 ORTHO05D003828 5.3e-103 377.9 214 100.0
QL11p029100 Quercus lobata HOM05D001937 ORTHO05D003828 4.2e-100 368.2 214 97.7
QL03p022329 Quercus lobata HOM05D001937 ORTHO05D003828 9.3e-100 367.1 214 96.7
QL03p072736 Quercus lobata HOM05D001937 ORTHO05D003828 2.1e-99 365.9 214 95.8
QL11p053735 Quercus lobata HOM05D001937 ORTHO05D003828 6.0e-99 364.4 214 96.3
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 3.8e-85 318.5 214 78.5
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 4.8e-72 275.0 214 75.2
QL04p008924 Quercus lobata HOM05D001937 ORTHO05D003828 2.4e-71 272.7 214 79.0
QL12p036527 Quercus lobata HOM05D001937 ORTHO05D003828 2.4e-71 272.7 214 79.0
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 9.1e-71 270.8 214 75.2
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 1.6e-70 270.0 222 74.3
QL12p030812 Quercus lobata HOM05D001937 ORTHO05D003828 1.7e-69 266.5 168 91.7
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 6.5e-69 264.6 223 71.7
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 2.7e-67 259.2 215 72.6
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 8.0e-67 257.7 215 71.2
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.0e-66 257.3 216 73.6
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 6.7e-66 254.6 217 72.4
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.5e-65 253.4 211 69.2
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 2.6e-65 252.7 222 69.8
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 9.7e-65 250.8 215 69.3
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.7e-64 250.0 224 66.5
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 1.7e-64 250.0 217 70.5
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 2.2e-64 249.6 215 69.3
QL02p062665 Quercus lobata HOM05D001937 ORTHO05D003828 4.8e-64 248.4 208 76.0
QL06p020738 Quercus lobata HOM05D001937 ORTHO05D003828 4.8e-64 248.4 208 76.0
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 1.1e-63 247.3 215 69.8
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 1.1e-63 247.3 217 69.1
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 1.8e-63 246.5 217 71.4
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 9.1e-63 244.2 212 71.2
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 2.7e-62 242.7 212 65.6
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 1.0e-61 240.7 223 68.6
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 1.3e-61 240.4 212 70.3
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 2.2e-61 239.6 223 68.6
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 2.9e-61 239.2 216 69.4
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 8.5e-61 237.7 216 70.4
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.5e-60 236.9 224 64.7
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 3.2e-60 235.7 212 64.2
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 5.5e-60 235.0 220 65.5
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 5.5e-60 235.0 216 69.4
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 3.6e-59 232.3 212 68.4
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 6.1e-59 231.5 224 62.5
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.3e-58 229.6 216 64.4
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 5.2e-58 228.4 216 67.6
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 3.4e-57 225.7 223 61.0
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 4.4e-57 225.3 210 62.4
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 4.4e-57 225.3 211 64.9
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 5.7e-57 224.9 221 63.8
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 5.7e-57 224.9 212 65.6
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 7.5e-57 224.6 210 62.4
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 3.7e-56 222.2 214 62.1
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 3.7e-56 222.2 223 65.0
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.8e-56 221.9 212 62.7
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 4.8e-56 221.9 208 68.3
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 6.3e-56 221.5 217 61.3
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 2.4e-55 219.5 211 64.9
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 1.6e-54 216.9 223 64.6
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 2.0e-54 216.5 224 58.0
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 2.0e-54 216.5 206 62.6
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 2.0e-54 216.5 206 62.6
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 4.5e-54 215.3 216 65.7
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 7.7e-54 214.5 224 65.2
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 2.9e-53 212.6 217 58.1
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 2.9e-53 212.6 214 57.5
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 6.5e-53 211.5 224 64.7
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 6.5e-53 211.5 211 64.0
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 8.5e-53 211.1 189 70.4
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 1.5e-52 210.3 222 57.7
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 1.5e-52 210.3 223 62.8
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 2.5e-52 209.5 221 58.4
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 2.5e-52 209.5 224 63.8
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 3.2e-52 209.1 216 58.3
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 4.2e-52 208.8 224 64.3
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 1.0e-50 204.1 140 81.4
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.4e-50 203.8 223 61.9
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.4e-50 203.8 223 61.9
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 8.8e-50 201.1 205 59.0
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 1.2e-49 200.7 205 59.0
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 2.6e-49 199.5 216 56.5
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 9.8e-49 197.6 215 57.2
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 4.9e-48 195.3 225 60.0
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 4.9e-48 195.3 219 55.7
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 6.3e-48 194.9 222 58.6
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 6.3e-48 194.9 202 57.4
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 8.3e-48 194.5 209 57.4
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 2.4e-47 193.0 223 54.7
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 4.1e-47 192.2 223 54.7
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 9.2e-47 191.0 221 58.4
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 2.0e-46 189.9 219 58.4
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 3.5e-46 189.1 224 58.5
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 3.5e-46 189.1 224 58.5
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 3.5e-46 189.1 222 57.7
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 5.9e-46 188.3 224 58.0
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 7.7e-46 188.0 219 57.5
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 1.0e-45 187.6 220 57.7
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 1.0e-45 187.6 224 57.6
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 2.3e-45 186.4 139 76.3
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 3.8e-45 185.7 219 57.5
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 7.3e-44 181.4 214 55.1
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 7.3e-44 181.4 216 57.9
Atru.chr8.1124 Acer truncatum HOM05D001937 ORTHO05D003828 1.8e-42 176.8 222 59.0
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 1.8e-42 176.8 235 50.6
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 1.2e-41 174.1 222 51.4
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 1.5e-41 173.7 216 57.4
Aqoxy3G01594 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.6e-41 172.9 199 53.8
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 4.4e-41 172.2 139 71.9
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 7.5e-41 171.4 209 52.6
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 9.8e-41 171.0 139 71.2
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 9.8e-41 171.0 139 71.2
SEGI_20322 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 2.9e-40 169.5 139 69.1
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 8.3e-40 167.9 138 68.1
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.1e-39 167.5 221 54.3
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 2.4e-39 166.4 222 54.5
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 5.4e-39 165.2 270 44.4
Os06g0645800 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 9.2e-39 164.5 210 48.1
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 3.0e-37 159.5 219 48.9
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 1.1e-36 157.5 138 66.7
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 1.9e-36 156.8 138 66.7
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 1.9e-36 156.8 138 66.7
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 2.5e-36 156.4 138 66.7
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 2.5e-36 156.4 138 66.7
HPP92_017202 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.8e-34 150.2 201 48.3
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 3.1e-34 149.4 192 54.7
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 3.1e-34 149.4 202 50.0
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 5.2e-34 148.7 221 48.9
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 1.5e-33 147.1 138 60.9
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 7.5e-33 144.8 122 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 1.3e-29 134.0 223 41.7
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 2.3e-29 133.3 219 46.1
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 3.9e-29 132.5 137 60.6
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 3.1e-26 122.9 238 42.0
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 8.9e-26 121.3 246 41.5
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 2.6e-25 119.8 216 45.4
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 4.4e-25 119.0 238 41.6
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.7e-24 117.1 251 42.6
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 2.8e-19 99.8 111 57.7
Mapoly0048s0004 Marchantia polymorpha HOM05D001937 ORTHO05D003828 1.3e-16 90.9 185 39.5
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 2.1e-14 83.6 177 42.4
Lsat_1_v5_gn_4_144260 Lactuca sativa HOM05D001937 ORTHO05D003828 9.6e-12 74.7 68 67.6
PSO384G4225 Papaver somniferum HOM05D003118 ORTHO05D003618 1.2e-11 74.3 143 39.9
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 2.8e-11 73.2 46 78.3
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 3.1e-10 69.7 132 40.2
PSO266G0025 Papaver somniferum HOM05D048025 ORTHO05D003828 8.9e-10 68.2 130 42.3
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 3.2e-07 59.7 47 66.0


User provided reference genes

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