Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 4.4e-192 674.5 343 100.0
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.1e-107 394.0 342 63.5
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.1e-102 377.5 343 60.3
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.2e-102 375.9 339 60.5
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-101 374.0 343 60.9
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.0e-100 370.9 340 59.7
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.3e-100 369.8 341 59.8
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 6.7e-100 368.2 340 60.0
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.5e-99 366.3 339 59.6
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 5.7e-99 365.2 340 58.5
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 9.7e-99 364.4 340 58.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-98 364.0 340 58.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.3e-98 364.0 340 58.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.8e-98 362.8 340 57.9
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.8e-98 362.8 340 58.5
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.8e-98 362.1 340 58.2
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 8.2e-98 361.3 339 58.1
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.1e-97 360.9 340 57.6
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.1e-97 360.9 334 60.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.4e-97 360.5 340 58.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.4e-97 360.5 340 57.1
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 6.9e-97 358.2 340 57.9
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 9.1e-97 357.8 331 60.1
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.6e-96 356.3 340 57.1
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 3.4e-96 355.9 340 57.4
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 7.7e-96 354.8 340 57.4
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.2e-95 353.2 337 58.5
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-95 352.8 340 57.1
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.9e-95 352.8 340 56.5
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.8e-95 352.4 343 57.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.5e-95 351.7 340 57.4
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 3.2e-94 349.4 334 56.0
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.5e-94 348.6 343 56.9
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 9.4e-94 347.8 340 56.2
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 2.1e-93 346.7 335 57.0
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 4.7e-93 345.5 343 56.9
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 4.7e-93 345.5 348 56.0
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 4.7e-93 345.5 332 57.5
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 6.1e-93 345.1 343 56.3
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 6.1e-93 345.1 343 56.3
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.9e-93 344.7 340 55.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.0e-92 344.4 339 55.5
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.0e-92 344.4 326 58.6
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.4e-92 344.0 340 55.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.9e-92 342.4 339 55.5
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.5e-91 340.5 340 56.2
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.5e-91 340.5 335 55.2
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.0e-91 340.1 340 56.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-91 340.1 332 56.6
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-91 340.1 332 56.6
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 4.4e-91 339.0 340 54.7
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.4e-91 339.0 332 56.9
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.4e-91 339.0 343 56.6
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-91 338.2 332 56.3
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.3e-90 337.4 339 54.9
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.7e-90 337.0 340 55.3
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.7e-90 337.0 339 54.9
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 4.8e-90 335.5 332 56.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.3e-90 335.1 339 53.4
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-89 334.3 336 55.4
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-89 334.3 336 55.4
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.4e-89 334.0 340 55.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 7.0e-89 331.6 339 53.1
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 9.1e-89 331.3 312 59.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.2e-88 330.9 341 54.5
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.9e-88 328.6 331 54.7
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 5.9e-88 328.6 340 54.1
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 5.9e-88 328.6 332 53.9
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 5.9e-88 328.6 359 52.1
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.7e-87 327.0 339 54.0
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.9e-87 326.2 331 54.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.9e-87 326.2 339 54.9
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.5e-86 323.2 335 53.4
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.2e-86 322.8 336 54.2
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 3.2e-86 322.8 339 53.4
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 3.2e-86 322.8 339 53.4
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 3.2e-86 322.8 339 53.4
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.2e-86 322.8 332 53.0
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 4.2e-86 322.4 312 57.4
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 9.4e-86 321.2 339 52.2
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 9.4e-86 321.2 334 53.6
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.6e-85 320.5 353 52.1
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.1e-85 320.1 339 51.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 8.0e-85 318.2 340 52.6
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.0e-84 317.8 339 53.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.4e-84 317.4 308 57.1
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.0e-84 316.2 339 51.0
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 8.8e-84 314.7 340 52.6
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.3e-83 312.8 344 54.1
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.4e-83 312.4 387 48.1
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 7.4e-83 311.6 340 52.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.4e-83 311.6 336 52.7
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.7e-82 310.5 345 52.2
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.7e-82 309.3 339 51.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 6.3e-82 308.5 332 53.3
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 8.2e-82 308.1 327 53.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.1e-81 307.8 332 51.8
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.3e-81 305.4 339 50.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.2e-80 304.3 311 54.7
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.6e-80 303.1 365 48.8
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.3e-79 300.8 295 56.3
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.8e-79 299.3 302 54.6
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 5.7e-75 285.4 313 50.2
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 3.1e-73 279.6 309 50.5
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.5e-72 276.2 340 47.4
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 9.4e-70 268.1 168 78.6
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 2.3e-68 263.5 339 47.2
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 7.5e-67 258.5 276 51.8
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.5e-64 249.2 146 82.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 8.6e-63 245.0 271 51.7
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 7.5e-59 231.9 328 41.5
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 3.2e-57 226.5 123 96.7
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 7.0e-57 225.3 123 95.9
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.0e-57 225.3 267 47.9
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.5e-56 223.0 339 38.1
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.5e-56 223.0 140 78.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.5e-56 223.0 140 78.6
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.6e-53 214.2 325 38.5
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 9.8e-51 204.9 245 47.8
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.9e-49 200.7 120 82.5
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 9.2e-49 198.4 126 77.0
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.5e-46 190.3 119 77.3
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 4.0e-44 183.0 120 73.3
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 8.9e-44 181.8 235 46.4
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.5e-43 181.0 167 54.5
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.7e-42 177.6 225 45.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 3.5e-40 169.9 168 50.6
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.7e-39 167.5 128 69.5
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 3.0e-39 166.8 282 40.8
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-38 164.1 100 78.0
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.4e-36 157.9 120 68.3
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 5.4e-33 146.0 130 59.2
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.2e-33 145.2 122 66.4
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.5e-30 137.1 121 62.8
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 9.6e-30 135.2 335 31.3
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 1.4e-28 131.3 85 71.8
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-27 128.3 111 60.4
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 9.9e-27 125.2 173 43.4
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.4e-25 120.6 100 69.0
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 9.3e-25 118.6 91 64.8
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.3e-21 108.2 71 74.6
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 6.9e-20 102.4 174 36.2
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.6e-19 99.0 54 85.2
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.9e-18 97.1 73 60.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 3.8e-18 96.7 51 86.3
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.4e-17 94.0 58 75.9
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.2e-17 93.6 51 82.4
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.2e-16 91.7 146 33.6
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 3.5e-16 90.1 166 41.0
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-14 84.7 62 66.1
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 9.9e-11 72.0 39 84.6
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 9.3e-09 65.5 33 84.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 2.3e-07 60.8 30 93.3


User provided reference genes

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