Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 0.0e+00 1422.1 716 100.0
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1152.1 709 80.0
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1144.8 693 80.7
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1142.5 704 79.7
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1090.9 722 74.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 0.0e+00 1075.1 641 80.5
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.3e-308 1060.4 737 72.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 4.1e-307 1057.7 682 74.6
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.8e-306 1053.5 710 73.2
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.3e-305 1052.7 734 72.1
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 4.3e-304 1047.7 682 73.9
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 5.6e-304 1047.3 673 74.6
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.5e-304 1046.6 712 71.2
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.2e-303 1046.2 645 76.6
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.6e-303 1045.8 675 74.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.0e-303 1043.5 675 74.5
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.3e-302 1042.0 675 74.1
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.2e-301 1039.6 708 71.8
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 3.4e-301 1038.1 716 71.2
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.4e-301 1037.7 649 76.0
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.7e-300 1035.8 723 71.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 3.7e-300 1034.6 712 71.9
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.4e-299 1031.9 681 75.0
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.4e-299 1030.8 707 72.6
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 9.2e-299 1030.0 688 73.5
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 3.5e-298 1028.1 706 70.4
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.3e-297 1025.4 716 70.4
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 5.0e-297 1024.2 643 75.9
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 5.6e-296 1020.8 736 69.8
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 3.6e-295 1018.1 734 68.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.1e-294 1016.5 686 71.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 8.9e-294 1013.4 698 71.6
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.2e-293 1013.1 730 68.9
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.6e-293 1011.9 712 71.8
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 4.4e-293 1011.1 726 70.9
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 5.8e-293 1010.7 642 74.9
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.3e-292 1009.6 656 72.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 3.2e-291 1005.0 683 71.9
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 6.0e-290 1000.7 720 69.3
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.0e-289 1000.0 677 71.2
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 8.6e-289 996.9 714 70.2
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 2.5e-288 995.3 709 69.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 8.1e-287 990.3 663 70.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 8.1e-287 990.3 703 68.1
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.1e-286 989.9 739 65.9
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.4e-286 989.6 666 70.7
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.1e-286 988.4 646 71.8
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.4e-283 979.5 747 66.5
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 6.0e-282 974.2 654 70.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.3e-281 973.0 730 66.3
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.1e-280 969.9 665 68.6
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.6e-279 966.1 711 67.2
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.8e-279 965.3 711 67.2
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.6e-279 964.9 642 72.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.4e-275 952.2 733 64.5
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.2e-274 949.9 717 67.6
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 5.1e-273 944.5 652 69.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 9.6e-272 940.3 718 66.4
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 3.6e-271 938.3 713 66.3
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.9e-270 934.1 706 66.1
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 9.0e-270 933.7 713 65.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 9.0e-270 933.7 681 67.0
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 5.8e-269 931.0 716 66.8
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.7e-268 929.5 724 64.1
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.9e-268 927.9 653 68.9
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 6.4e-268 927.5 697 65.1
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 8.4e-268 927.2 645 67.9
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.9e-267 926.0 644 68.0
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.2e-266 923.3 727 62.9
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.2e-266 923.3 724 64.1
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.2e-266 923.3 727 62.9
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.2e-266 923.3 727 62.9
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-266 922.5 658 67.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 3.5e-266 921.8 658 67.0
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 4.6e-266 921.4 565 77.5
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.3e-265 919.1 717 64.0
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 8.7e-265 917.1 761 61.6
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-264 916.8 645 68.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.1e-264 916.8 694 64.8
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.5e-264 916.4 722 62.5
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 7.3e-264 914.1 645 68.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 3.6e-263 911.8 727 63.0
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 4.8e-263 911.4 658 65.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 9.0e-262 907.1 707 62.5
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 9.0e-262 907.1 589 73.9
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.7e-260 902.9 703 62.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 9.3e-259 897.1 696 66.4
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.6e-258 896.3 669 65.6
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.3e-257 893.3 732 62.6
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.8e-257 892.9 652 66.9
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.0e-257 892.1 693 65.4
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.3e-256 888.6 733 60.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 5.6e-256 887.9 727 61.5
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 9.6e-256 887.1 714 63.4
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.8e-252 875.2 739 61.3
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.9e-251 872.8 637 69.4
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.0e-249 867.1 694 63.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-249 866.3 713 62.1
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 3.0e-249 865.5 682 66.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 3.3e-240 835.5 706 64.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 3.3e-240 835.5 676 62.1
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.7e-236 823.2 714 61.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 3.0e-233 812.4 684 61.5
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.3e-231 804.7 788 53.9
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.5e-227 791.6 646 60.5
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 5.5e-227 791.6 697 60.7
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.5e-227 791.6 724 57.3
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.6e-226 790.0 706 56.2
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 8.5e-220 767.7 717 54.3
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 9.7e-216 754.2 714 52.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.3e-214 748.4 736 55.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.5e-213 745.7 647 56.0
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 8.5e-212 741.1 708 52.3
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.5e-211 740.3 579 62.7
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.5e-195 685.3 482 70.5
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 8.9e-193 677.9 521 67.0
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.7e-192 675.2 736 52.0
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 7.5e-192 674.9 522 64.9
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-190 670.6 686 52.9
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.4e-190 669.8 536 66.4
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.7e-189 666.4 721 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.1e-186 656.8 608 55.3
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.1e-182 644.4 650 53.7
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.4e-174 617.5 465 68.2
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.3e-172 610.9 462 64.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.6e-171 605.5 449 64.1
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.8e-169 598.6 494 61.9
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 4.4e-168 595.9 438 64.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.4e-167 592.0 426 64.6
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 7.8e-165 585.1 706 45.0
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.4e-152 542.7 740 40.3
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.6e-136 490.3 498 52.6
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.9e-134 484.2 671 38.6
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 5.1e-132 476.1 687 39.6
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.4e-129 467.2 468 53.6
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 2.4e-121 440.7 648 37.7
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.4e-113 414.8 345 59.1
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.3e-107 393.7 461 46.6
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 5.9e-96 356.3 188 86.2
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 4.2e-94 350.1 191 82.2
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.6e-93 348.2 226 74.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.6e-93 348.2 182 87.4
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.8e-90 336.7 168 90.5
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.7e-80 304.3 185 73.0
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.5e-80 303.5 185 73.0
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 4.5e-80 303.5 192 71.4
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 8.9e-76 289.3 185 73.0
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.4e-73 282.0 155 80.0
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.0e-68 265.8 135 87.4
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.4e-66 256.5 183 66.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.4e-57 228.0 150 69.3
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 2.7e-56 224.6 216 58.3
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.0e-52 210.7 102 89.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 6.2e-45 186.8 113 76.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 4.4e-43 180.6 84 95.2
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 8.4e-42 176.4 111 73.0
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.5e-38 164.9 109 72.5
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-32 144.4 79 79.7
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.6e-27 128.3 75 77.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 7.6e-27 126.7 72 79.2
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.4e-25 122.5 149 46.3
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.9e-25 122.1 72 73.6
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 6.7e-23 113.6 85 61.2
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 9.6e-22 109.8 115 47.0
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.3e-14 84.7 50 70.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 6.9e-12 77.0 50 72.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 4.5e-11 74.3 44 75.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.2e-09 67.8 43 74.4
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 3.0e-07 61.6 62 54.8


User provided reference genes

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