Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-63 246.5 119 100.0
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 5.9e-11 71.2 39 84.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 3.8e-10 68.6 37 83.8
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.0e-10 68.2 39 82.1
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 6.5e-10 67.8 39 79.5
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 6.5e-10 67.8 36 86.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.1e-09 67.0 39 82.1
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.1e-09 67.0 37 81.1
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.1e-09 67.0 34 88.2
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.1e-09 67.0 39 79.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.1e-09 67.0 39 79.5
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.1e-09 67.0 36 83.3
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.1e-09 67.0 39 79.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.1e-09 67.0 44 72.7
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.4e-09 66.6 39 82.1
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.4e-09 66.6 37 78.4
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.4e-09 66.6 36 83.3
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.4e-09 66.6 39 79.5
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.4e-09 66.6 39 79.5
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.4e-09 66.6 39 79.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.4e-09 66.6 39 79.5
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.9e-09 66.2 36 86.1
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.9e-09 66.2 37 81.1
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.9e-09 66.2 36 86.1
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.9e-09 66.2 34 88.2
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.9e-09 66.2 39 79.5
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.9e-09 66.2 37 81.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.9e-09 66.2 37 81.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-09 66.2 32 90.6
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.9e-09 66.2 39 79.5
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.9e-09 66.2 37 81.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.5e-09 65.9 34 85.3
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.5e-09 65.9 39 79.5
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.5e-09 65.9 39 76.9
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-09 65.9 37 81.1
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.5e-09 65.9 39 76.9
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.2e-09 65.5 36 83.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.2e-09 65.5 52 61.5
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.2e-09 65.5 39 74.4
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.2e-09 65.5 39 74.4
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 3.2e-09 65.5 39 74.4
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.2e-09 65.5 34 85.3
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.2e-09 65.5 35 82.9
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 3.2e-09 65.5 42 76.2
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 4.2e-09 65.1 39 74.4
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.2e-09 65.1 34 85.3
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.2e-09 65.1 36 83.3
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 4.2e-09 65.1 36 83.3
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 4.2e-09 65.1 37 78.4
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 4.2e-09 65.1 35 82.9
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 4.2e-09 65.1 37 78.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 5.5e-09 64.7 34 85.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 5.5e-09 64.7 34 85.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 5.5e-09 64.7 32 90.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 5.5e-09 64.7 39 74.4
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.5e-09 64.7 32 90.6
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 5.5e-09 64.7 39 76.9
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.5e-09 64.7 32 87.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 5.5e-09 64.7 32 87.5
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 7.2e-09 64.3 32 87.5
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 7.2e-09 64.3 32 87.5
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 7.2e-09 64.3 32 87.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 7.2e-09 64.3 36 80.6
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 9.4e-09 63.9 35 80.0
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 9.4e-09 63.9 39 74.4
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 9.4e-09 63.9 36 80.6
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 9.4e-09 63.9 34 82.4
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 9.4e-09 63.9 34 82.4
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 9.4e-09 63.9 34 82.4
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 9.4e-09 63.9 34 82.4
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.2e-08 63.5 34 85.3
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.2e-08 63.5 37 75.7
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.6e-08 63.2 34 82.4
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-08 63.2 32 87.5
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.6e-08 63.2 36 80.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.1e-08 62.8 39 76.9
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.1e-08 62.8 34 82.4
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 2.7e-08 62.4 39 76.9
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.7e-08 62.4 45 66.7
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.7e-08 62.4 34 82.4
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.6e-08 62.0 36 72.2
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.7e-08 61.6 36 80.6
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 4.7e-08 61.6 32 84.4
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 4.7e-08 61.6 44 65.9
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 4.7e-08 61.6 36 83.3
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.1e-08 61.2 39 74.4
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 6.1e-08 61.2 32 84.4
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.1e-08 61.2 34 76.5
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.1e-08 61.2 34 76.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.1e-08 61.2 34 76.5
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 7.9e-08 60.8 39 74.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 7.9e-08 60.8 39 74.4
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.4e-07 60.1 36 77.8
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.4e-07 60.1 34 79.4
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.4e-07 60.1 34 79.4
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.3e-07 59.3 39 71.8
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.9e-07 58.5 37 73.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.9e-07 58.5 32 78.1
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.9e-07 58.5 33 78.8
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.9e-07 58.5 34 76.5
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 5.1e-07 58.2 39 66.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 6.7e-07 57.8 36 75.0
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 6.7e-07 57.8 87 41.4
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.5e-06 56.6 39 71.8
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.3e-06 55.5 39 64.1
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.4e-06 55.1 39 66.7
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.4e-06 55.1 39 66.7
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.4e-06 55.1 39 66.7
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 5.7e-06 54.7 39 64.1
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.7e-06 54.7 30 80.0


User provided reference genes

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