Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p034783 Quercus lobata HOM05D003704 ORTHO05D005892 6.1e-39 163.7 83 100.0
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 8.8e-14 80.1 45 84.4
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 1.5e-13 79.3 45 80.0
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 1.5e-13 79.3 45 80.0
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 1.5e-13 79.3 45 80.0
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 2.0e-13 79.0 45 82.2
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 2.0e-13 79.0 45 82.2
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 2.0e-13 79.0 45 82.2
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 2.6e-13 78.6 41 87.8
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 2.6e-13 78.6 45 77.8
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 2.6e-13 78.6 45 82.2
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 2.6e-13 78.6 45 82.2
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 3.4e-13 78.2 45 80.0
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 4.4e-13 77.8 45 80.0
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 4.4e-13 77.8 45 77.8
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 82.2
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 5.7e-13 77.4 41 82.9
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 5.7e-13 77.4 41 82.9
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 5.7e-13 77.4 46 76.1
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 77.8
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 5.7e-13 77.4 46 76.1
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 5.7e-13 77.4 45 80.0
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 77.8
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 7.5e-13 77.0 45 80.0
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 75.6
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 75.6
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 75.6
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 75.6
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 75.6
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 77.8
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 77.8
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 9.8e-13 76.6 45 77.8
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 1.3e-12 76.3 45 77.8
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 1.3e-12 76.3 45 75.6
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 1.3e-12 76.3 45 77.8
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.3e-12 76.3 45 80.0
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.3e-12 76.3 45 80.0
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 1.3e-12 76.3 45 77.8
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 1.7e-12 75.9 45 80.0
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 1.7e-12 75.9 45 77.8
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 1.7e-12 75.9 45 77.8
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 1.7e-12 75.9 45 77.8
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 2.2e-12 75.5 45 80.0
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 2.2e-12 75.5 45 80.0
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 2.2e-12 75.5 45 77.8
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 2.2e-12 75.5 45 80.0
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 2.8e-12 75.1 45 73.3
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 3.7e-12 74.7 45 75.6
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 3.7e-12 74.7 45 77.8
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.7e-12 74.7 41 85.4
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 3.7e-12 74.7 46 76.1
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 4.8e-12 74.3 45 77.8
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.8e-12 74.3 45 77.8
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 4.8e-12 74.3 45 77.8
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 4.8e-12 74.3 45 73.3
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 6.3e-12 73.9 45 77.8
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 6.3e-12 73.9 45 77.8
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 6.3e-12 73.9 91 47.3
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 6.3e-12 73.9 45 75.6
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 8.3e-12 73.6 45 75.6
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 1.1e-11 73.2 45 75.6
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 1.1e-11 73.2 37 89.2
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 1.1e-11 73.2 37 89.2
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 1.1e-11 73.2 41 78.0
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 1.4e-11 72.8 45 77.8
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 1.4e-11 72.8 46 71.7
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 1.4e-11 72.8 45 75.6
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 1.8e-11 72.4 45 75.6
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 1.8e-11 72.4 45 77.8
HPP92_001561 Vanilla planifolia HOM05D003704 ORTHO05D005892 2.4e-11 72.0 45 75.6
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.1e-11 71.6 45 73.3
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.1e-11 71.6 45 73.3
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 4.1e-11 71.2 45 73.3
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 4.1e-11 71.2 41 75.6
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 5.4e-11 70.9 45 73.3
RcHm_v2.0_Chr1g0320051 Rosa chinensis HOM05D003704 ORTHO05D005892 5.4e-11 70.9 61 57.4
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 5.4e-11 70.9 45 73.3
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 7.0e-11 70.5 45 75.6
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 7.0e-11 70.5 45 75.6
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 7.0e-11 70.5 45 75.6
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 7.0e-11 70.5 45 75.6
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 7.0e-11 70.5 45 73.3
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 7.0e-11 70.5 63 54.0
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 9.1e-11 70.1 40 75.0
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 9.1e-11 70.1 45 73.3
Lalb_Chr10g0094791 Lupinus albus HOM05D003704 ORTHO05D028681 9.1e-11 70.1 45 75.6
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 9.1e-11 70.1 45 75.6
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 1.2e-10 69.7 45 73.3
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 1.6e-10 69.3 46 71.7
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 2.0e-10 68.9 45 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 2.0e-10 68.9 41 73.2
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 2.0e-10 68.9 45 73.3
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 2.7e-10 68.6 44 75.0
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 3.5e-10 68.2 41 73.2
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 3.5e-10 68.2 41 70.7
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 3.5e-10 68.2 45 68.9
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 5.9e-10 67.4 55 58.2
Psat5g110280 Pisum sativum HOM05D003704 ORTHO05D005892 1.0e-09 66.6 45 71.1
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 1.1e-08 63.2 40 67.5


User provided reference genes

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