Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 5.1e-84 314.3 152 100.0
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.9e-70 269.2 144 92.4
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.9e-70 269.2 144 92.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.1e-46 190.3 146 67.1
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 6.5e-31 137.9 154 48.1
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.1e-30 137.1 146 50.0
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 3.0e-28 129.0 154 45.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 7.5e-27 124.4 144 45.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-26 123.6 151 46.4
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-26 123.6 157 46.5
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.7e-26 122.1 124 55.6
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 6.3e-26 121.3 154 46.8
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 9.1e-25 117.5 157 46.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.6e-21 106.7 140 46.4
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.8e-21 105.9 110 50.9
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.8e-20 103.2 108 54.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.4e-19 99.0 105 45.7
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 4.4e-19 98.6 135 43.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 5.7e-19 98.2 122 45.9
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 4.1e-17 92.0 133 42.9
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.2e-16 90.5 111 47.7
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.6e-16 90.1 159 38.4
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-16 89.7 133 43.6
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 5.9e-16 88.2 149 40.3
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 7.8e-16 87.8 133 43.6
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.8e-16 87.8 133 43.6
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.7e-15 86.7 174 39.1
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-15 86.7 142 37.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.9e-14 83.2 120 42.5
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.6e-13 80.1 149 34.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.1e-13 79.7 107 47.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.4e-12 77.0 109 39.4
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-12 76.6 155 35.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.8e-12 76.6 122 37.7
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 3.0e-12 75.9 136 38.2
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.0e-12 75.5 153 34.0
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 5.2e-12 75.1 96 43.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.8e-12 74.7 174 32.8
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.8e-12 74.7 64 57.8
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 6.8e-12 74.7 77 50.6
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 8.9e-12 74.3 99 38.4
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 8.9e-12 74.3 87 47.1
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.2e-11 73.9 148 34.5
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.2e-11 73.9 105 36.2
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.2e-11 73.9 108 38.0
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.5e-11 73.6 134 34.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.0e-11 73.2 147 32.7
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.6e-11 72.8 147 37.4
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.4e-11 72.4 167 35.9
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 4.4e-11 72.0 101 38.6
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 7.5e-11 71.2 151 37.7
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 9.8e-11 70.9 86 46.5
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.3e-10 70.5 97 44.3
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.2e-10 69.7 65 53.8
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.2e-10 69.7 88 43.2
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 3.7e-10 68.9 99 37.4
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.9e-10 68.6 83 45.8
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.3e-10 67.8 64 56.2
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.3e-10 67.8 64 56.2
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.3e-10 67.8 145 35.2
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-09 67.4 135 33.3
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 1.4e-09 67.0 104 39.4
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.8e-09 66.6 105 37.1
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 3.2e-09 65.9 130 33.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 4.1e-09 65.5 148 34.5
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 4.1e-09 65.5 148 34.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.1e-09 65.5 80 45.0
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 7.0e-09 64.7 148 34.5
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.2e-08 63.9 84 47.6
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.2e-08 63.9 85 43.5
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.0e-08 63.2 88 44.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.0e-08 63.2 113 37.2
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.7e-08 62.8 123 35.8
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 2.7e-08 62.8 83 43.4
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 4.6e-08 62.0 123 35.8
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.6e-08 62.0 82 47.6
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.6e-08 62.0 76 43.4
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 4.6e-08 62.0 83 41.0
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 4.6e-08 62.0 131 31.3
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.9e-08 61.6 66 45.5
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 7.8e-08 61.2 144 32.6
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.0e-07 60.8 70 44.3
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.3e-07 60.5 134 33.6
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.3e-07 60.5 132 34.8
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.7e-07 60.1 67 44.8
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.7e-07 60.1 154 31.2
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 2.3e-07 59.7 132 28.8
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.0e-07 59.3 70 44.3
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.9e-07 58.9 87 42.5
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 3.9e-07 58.9 76 42.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.9e-07 58.9 74 39.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 3.9e-07 58.9 148 31.8
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.9e-07 58.9 56 55.4
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 5.0e-07 58.5 105 36.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 6.6e-07 58.2 49 55.1
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 6.6e-07 58.2 65 43.1
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 8.6e-07 57.8 167 29.9
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 8.6e-07 57.8 74 41.9
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 1.1e-06 57.4 139 28.8
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.1e-06 57.4 59 45.8
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.5e-06 57.0 168 29.8
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-06 56.6 54 51.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.9e-06 56.6 54 51.9
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.9e-06 56.6 72 44.4
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 3.3e-06 55.8 113 35.4
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 5.6e-06 55.1 76 39.5
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 9.5e-06 54.3 144 31.9


User provided reference genes

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