Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 7.4e-312 1073.2 541 100.0
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 6.8e-123 445.3 740 41.6
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 8.1e-84 315.5 697 36.4
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 1.5e-77 294.7 709 34.6
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 8.4e-73 278.9 704 34.2
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 5.0e-57 226.5 706 29.3
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 7.9e-55 219.2 692 29.0
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 5.1e-54 216.5 706 28.2
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 1.4e-51 208.4 705 27.7
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.4e-51 207.6 719 27.4
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 3.1e-51 207.2 686 29.0
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 9.1e-51 205.7 707 28.1
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 2.6e-50 204.1 692 28.0
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 7.7e-50 202.6 697 27.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 3.2e-48 197.2 688 27.5
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 5.2e-46 189.9 702 27.6
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 5.2e-46 189.9 702 27.6
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 6.7e-46 189.5 702 27.6
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.1e-45 188.7 702 27.2
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.3e-44 185.3 716 26.4
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 4.8e-44 183.3 694 27.2
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 2.4e-43 181.0 683 27.5
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 9.1e-43 179.1 702 25.8
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 1.2e-42 178.7 705 27.1
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.0e-41 175.6 680 27.5
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.9e-41 174.1 681 27.3
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 8.5e-41 172.6 683 26.9
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 1.5e-40 171.8 534 29.0
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 1.5e-40 171.8 694 27.1
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 4.2e-40 170.2 716 25.8
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 4.0e-38 163.7 689 27.0
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 4.4e-37 160.2 693 24.8
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 4.4e-37 160.2 692 26.3
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 3.7e-36 157.1 702 24.5
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 4.8e-36 156.8 702 24.5
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 2.4e-35 154.5 689 24.5
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 2.0e-34 151.4 690 24.6
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 3.5e-34 150.6 811 23.6
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 7.7e-34 149.4 694 25.2
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 6.5e-33 146.4 731 23.4
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 6.5e-33 146.4 687 25.5
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 6.5e-33 146.4 691 25.5
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 6.5e-33 146.4 717 25.2
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 4.2e-32 143.7 697 25.4
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 4.2e-32 143.7 695 23.9
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 5.5e-32 143.3 697 24.8
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 9.4e-32 142.5 675 25.2
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 9.4e-32 142.5 713 24.1
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 1.2e-31 142.1 694 25.5
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 2.7e-31 141.0 700 24.0
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 8.0e-31 139.4 721 23.2
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 1.8e-30 138.3 695 23.7
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 1.8e-30 138.3 684 25.4
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 2.3e-30 137.9 193 44.6
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 2.3e-30 137.9 707 23.8
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 2.3e-30 137.9 679 23.7
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 3.0e-30 137.5 677 25.1
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 6.8e-30 136.3 689 25.3
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 8.8e-30 136.0 690 24.6
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 1.5e-29 135.2 705 23.5
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 4.4e-29 133.7 725 23.2
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 9.8e-29 132.5 687 23.1
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 1.3e-28 132.1 388 28.6
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 4.8e-28 130.2 690 24.3
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 4.8e-28 130.2 690 24.3
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 4.8e-28 130.2 719 23.1
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 4.1e-27 127.1 689 24.1
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 3.5e-26 124.0 707 24.2
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 7.7e-26 122.9 328 32.0
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 1.7e-25 121.7 688 23.5
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 1.7e-25 121.7 699 24.0
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 5.0e-25 120.2 689 23.9
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 2.5e-24 117.9 689 23.5
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 4.2e-24 117.1 299 31.8
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.2e-23 115.5 294 32.7
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 2.1e-23 114.8 328 30.8
QL07p004594 Quercus lobata HOM05D001734 ORTHO05D020518 1.8e-22 111.7 72 76.4
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 2.3e-22 111.3 686 23.5
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 9.8e-21 105.9 540 23.5
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 2.8e-20 104.4 677 23.3
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 3.7e-20 104.0 195 36.4
Cpa.g.sc76.49 Carica papaya HOM05D001734 ORTHO05D003483 1.6e-18 98.6 163 42.3
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.7e-18 97.8 242 31.8
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.3e-17 95.5 73 64.4
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 3.8e-17 94.0 551 22.9
QL01p024955 Quercus lobata HOM05D001734 ORTHO05D020518 5.0e-17 93.6 60 78.3
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 1.9e-16 91.7 215 32.1
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 6.1e-15 86.7 47 91.5
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.8e-14 85.1 142 40.8
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 5.2e-14 83.6 329 28.0
QL07p004610 Quercus lobata HOM05D001734 ORTHO05D020518 6.8e-14 83.2 78 60.3
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 5.8e-13 80.1 74 56.8
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 7.5e-13 79.7 162 37.0
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 7.5e-13 79.7 73 57.5
CAN.G853.42 Capsicum annuum HOM05D001734 ORTHO05D003483 1.7e-12 78.6 74 52.7
SHI17006 Sapria himalayana HOM05D001734 ORTHO05D020518 8.3e-12 76.3 97 40.2
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 5.4e-11 73.6 48 79.2
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 1.2e-10 72.4 67 55.2
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 2.0e-10 71.6 317 24.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.3e-09 68.9 97 45.4
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 1.7e-09 68.6 153 34.6
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 1.7e-09 68.6 321 24.0
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 3.0e-09 67.8 142 35.9
SHI17002 Sapria himalayana HOM05D001734 ORTHO05D003483 6.6e-09 66.6 73 50.7
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.6e-07 62.0 45 73.3
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 2.1e-07 61.6 61 49.2
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 8.0e-07 59.7 90 40.0
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 1.4e-06 58.9 264 26.5
QL05p026262 Quercus lobata HOM05D001734 ORTHO05D003483 1.8e-06 58.5 36 83.3
TPR.G29227 Trifolium pratense HOM05D001734 ORTHO05D003483 2.3e-06 58.2 59 50.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.1e-06 57.8 48 66.7


User provided reference genes

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