Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1788.5 908 100.0
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1516.1 904 84.1
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1407.9 910 78.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1405.2 908 78.4
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1404.8 909 78.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1403.7 903 79.6
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1396.3 909 78.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1391.7 910 78.0
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1391.7 940 74.8
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1389.0 916 77.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 908 77.6
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 916 77.4
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1385.9 914 77.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1381.7 908 76.2
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1380.9 927 76.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1380.5 916 77.2
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1379.8 908 77.4
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1379.4 908 77.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1378.6 904 78.0
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 909 77.7
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 910 76.0
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1372.8 916 77.0
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1372.5 911 76.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1371.7 911 76.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 909 77.3
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 903 77.4
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 908 76.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1370.5 909 77.3
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1369.8 910 75.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 908 76.3
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 910 76.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 912 76.5
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 908 76.9
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1364.4 910 77.3
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 908 76.1
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1358.2 903 76.3
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1355.9 915 75.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1354.7 910 75.1
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 910 75.5
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1351.7 909 75.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1349.7 911 75.5
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1347.4 909 75.0
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1345.5 911 75.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1345.5 924 74.0
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 910 75.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1341.6 910 75.2
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1340.9 910 75.2
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1334.7 986 71.2
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1332.8 974 71.1
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 910 74.4
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 909 74.1
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1314.7 909 73.6
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1313.5 903 73.8
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1310.8 920 72.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 912 74.1
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1301.2 909 72.6
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1300.4 907 73.4
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1299.3 907 72.3
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 920 71.8
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1297.0 912 73.4
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1295.8 907 72.1
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1295.4 909 72.4
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1295.0 910 73.6
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1294.6 924 70.9
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1293.9 920 71.7
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1292.7 960 69.5
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1291.2 920 71.6
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1286.9 960 69.1
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1280.8 992 67.8
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1275.8 906 71.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1275.0 925 70.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1273.8 925 70.6
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1273.8 925 70.6
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1273.8 925 70.6
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1270.0 925 70.3
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1270.0 925 70.3
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1266.9 925 69.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1266.5 925 70.3
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1265.0 925 70.2
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1263.4 906 70.5
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1260.0 925 69.9
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1256.9 925 69.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1253.0 826 77.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1249.2 908 70.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1233.8 853 73.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1211.4 908 70.9
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1208.7 922 66.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1207.6 904 67.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1201.8 1179 58.2
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1190.6 907 67.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1172.5 792 75.3
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1107.4 906 65.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1076.6 906 62.8
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.4e-306 1055.4 942 59.7
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.2e-300 1036.6 901 58.7
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.5e-300 1036.2 908 57.8
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.2e-283 979.2 748 69.0
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 4.6e-281 971.5 905 54.5
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.2e-275 952.6 917 60.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.2e-267 926.0 864 58.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.2e-265 920.2 690 68.3
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 8.7e-248 860.9 781 62.0
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 9.4e-234 814.3 665 64.2
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 4.7e-225 785.4 737 58.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.2e-211 740.0 473 80.3
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 4.1e-205 719.2 467 78.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.8e-200 701.8 504 71.2
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.1e-176 624.8 368 86.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.4e-176 624.4 341 90.3
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.6e-175 620.2 417 73.4
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.2e-173 611.7 669 53.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.3e-163 581.3 911 37.9
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 7.8e-156 555.4 913 38.1
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.6e-148 529.6 370 70.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 9.6e-130 468.8 892 34.4
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.6e-124 451.4 463 54.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 6.1e-116 422.9 1036 30.9
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 3.9e-115 420.2 373 62.7
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 6.9e-112 409.5 663 41.6
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.7e-105 387.1 341 56.3
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.5e-102 376.3 332 56.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.3e-83 314.7 274 60.2
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.8e-80 305.1 297 56.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.0e-79 301.6 165 87.9
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.5e-79 300.4 320 50.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 6.6e-70 270.0 252 56.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.3e-67 261.5 159 75.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-42 179.1 97 85.6
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-35 156.0 101 74.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 4.0e-35 154.5 112 64.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-33 147.5 95 75.8
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-32 145.6 93 77.4
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-30 137.9 91 72.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-29 134.4 91 71.4
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 9.6e-29 133.3 67 89.6
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.6e-28 132.5 164 50.0
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-28 131.7 85 72.9
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-28 131.0 106 67.9
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-26 125.9 87 67.8
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.5e-26 124.4 125 58.4
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.8e-26 124.0 204 41.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 2.2e-25 122.1 96 67.7
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 6.4e-25 120.6 113 57.5
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.9e-24 119.0 100 64.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 7.1e-24 117.1 103 63.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 3.9e-22 111.3 78 62.8
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-21 108.6 68 72.1
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-20 106.3 128 46.9
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-20 105.9 96 60.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 8.2e-20 103.6 107 51.4
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 2.2e-17 95.5 54 92.6
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-17 94.7 115 47.8
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-16 90.5 82 62.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-14 86.7 51 74.5
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-14 85.1 51 72.5
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.3e-12 79.7 49 81.6
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.8e-11 75.9 80 53.8
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-10 73.2 37 94.6
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.7e-09 69.3 196 29.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 3.8e-09 68.2 88 46.6
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 3.8e-09 68.2 88 46.6
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 6.5e-09 67.4 85 51.8
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-08 66.2 44 75.0
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 2.3e-06 58.9 41 70.7


User provided reference genes

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