Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.5e-155 552.7 264 100.0
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-81 306.6 284 57.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 2.0e-80 303.1 335 51.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 3.4e-51 206.1 203 55.7
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 7.3e-46 188.3 262 44.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.2e-45 187.6 193 53.4
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 6.4e-42 175.3 211 49.3
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 8.1e-37 158.3 263 40.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.1e-36 157.9 263 41.1
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-36 157.1 243 42.4
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.4e-36 156.8 272 37.5
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.1e-36 156.4 272 37.5
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-35 154.1 269 40.9
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 9.9e-35 151.4 290 35.9
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 9.9e-35 151.4 180 51.7
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 6.4e-34 148.7 245 38.8
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-32 144.4 257 37.4
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.9e-32 141.7 289 37.7
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.9e-32 141.7 289 37.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.3e-31 140.2 319 32.3
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.9e-30 137.1 247 36.0
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.5e-30 136.7 271 32.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 5.6e-30 135.6 275 35.3
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 5.6e-30 135.6 262 37.0
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.3e-29 134.4 236 36.0
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.1e-29 133.7 239 38.1
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.6e-29 132.9 251 35.5
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 8.1e-29 131.7 232 37.1
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.5e-27 127.5 255 36.1
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 9.9e-27 124.8 272 35.7
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 4.9e-26 122.5 271 33.2
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 4.9e-26 122.5 244 32.8
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.4e-25 120.9 249 32.5
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.5e-25 119.0 297 32.7
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.2e-24 117.9 278 32.4
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.2e-24 117.9 239 33.9
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 4.6e-24 115.9 284 31.0
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.6e-24 115.9 256 34.4
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 6.0e-24 115.5 290 32.1
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.0e-23 114.8 249 32.5
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.0e-23 114.8 294 31.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-23 113.6 249 31.7
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 3.9e-23 112.8 252 32.1
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 6.7e-23 112.1 253 33.2
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.1e-22 111.3 224 36.6
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-22 110.5 252 32.1
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.9e-22 110.5 207 35.7
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.9e-22 110.5 262 33.2
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.9e-22 110.5 267 30.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.5e-22 110.2 281 31.7
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.5e-22 110.2 276 31.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 4.3e-22 109.4 285 30.5
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 5.6e-22 109.0 309 30.1
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 7.4e-22 108.6 272 28.7
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.6e-21 107.5 247 33.6
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.6e-21 107.5 272 31.2
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.8e-21 106.7 228 33.8
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.8e-21 105.9 272 28.3
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 6.2e-21 105.5 224 34.4
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 6.2e-21 105.5 200 35.5
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.1e-21 105.1 216 34.3
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 8.1e-21 105.1 238 33.2
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.1e-21 105.1 314 30.3
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.1e-20 104.8 169 40.2
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.4e-20 104.4 267 31.8
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.4e-20 103.6 235 32.3
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.4e-20 103.6 269 29.7
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.3e-20 102.4 214 32.7
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 5.3e-20 102.4 297 30.0
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.2e-19 101.3 231 34.6
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.2e-19 101.3 208 35.1
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.5e-19 100.9 267 30.0
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.5e-19 100.9 230 32.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.5e-19 100.9 230 32.6
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.0e-19 100.5 229 32.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.0e-19 100.5 241 34.4
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 2.6e-19 100.1 257 30.0
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.6e-19 100.1 252 33.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.0e-18 98.2 231 34.2
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.7e-18 97.4 295 26.8
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.2e-18 97.1 231 34.2
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.2e-16 91.3 141 41.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 2.1e-16 90.5 321 25.2
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.0e-15 88.2 232 29.3
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.3e-15 87.8 138 39.9
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.3e-15 87.8 86 46.5
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 8.7e-15 85.1 211 30.3
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 8.7e-15 85.1 284 25.7
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.1e-14 84.7 176 34.7
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 5.7e-14 82.4 256 28.9
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 9.6e-14 81.6 215 28.8
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 9.6e-14 81.6 120 42.5
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.3e-13 81.3 137 36.5
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.6e-13 80.9 159 35.8
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 2.1e-13 80.5 247 25.5
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.1e-13 80.5 172 32.6
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.8e-13 79.3 234 29.1
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 4.8e-13 79.3 148 39.2
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.8e-12 77.4 221 29.0
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.8e-12 77.4 170 32.4
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 4.1e-12 76.3 158 32.9
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.3e-12 75.9 163 31.3
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.5e-11 74.3 349 24.4
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 3.4e-11 73.2 112 42.0
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 7.6e-11 72.0 164 34.8
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 7.6e-11 72.0 172 36.0
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.8e-10 69.7 137 32.8
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.1e-09 68.2 317 26.8
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.4e-09 67.8 100 37.0
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.4e-09 67.8 100 37.0
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 2.5e-09 67.0 100 37.0
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.6e-08 64.3 63 50.8
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.6e-08 63.2 162 32.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.3e-07 61.2 160 27.5
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.3e-07 60.5 149 28.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-06 58.2 161 28.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.5e-06 57.8 164 30.5
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.9e-06 57.4 167 29.3
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 2.5e-06 57.0 130 29.2
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.3e-06 56.2 164 29.9
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 5.7e-06 55.8 159 26.4
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 7.4e-06 55.5 143 27.3
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 9.7e-06 55.1 156 26.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 9.7e-06 55.1 156 26.9
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 9.7e-06 55.1 155 26.5
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 9.7e-06 55.1 124 34.7


User provided reference genes

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