Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g261640 Pisum sativum HOM05D003093 ORTHO05D004301 8.0e-36 153.3 81 100.0
Psat2g026480 Pisum sativum HOM05D016485 ORTHO05D000844 3.7e-33 144.4 80 95.0
Psat2g026440 Pisum sativum HOM05D016485 ORTHO05D000844 2.4e-32 141.7 80 93.8
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.2e-12 76.3 46 91.3
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 5.8e-10 67.4 32 100.0
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 4.9e-09 64.3 32 93.8
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 4.9e-09 64.3 32 93.8
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.9e-09 64.3 53 64.2
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 6.4e-09 63.9 53 62.3
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 6.4e-09 63.9 53 62.3
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 6.4e-09 63.9 53 62.3
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 6.4e-09 63.9 53 62.3
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 6.4e-09 63.9 53 62.3
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 6.4e-09 63.9 53 62.3
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 8.3e-09 63.5 53 60.4
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 8.3e-09 63.5 53 60.4
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 1.4e-08 62.8 53 60.4
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 2.4e-08 62.0 32 87.5
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 3.2e-08 61.6 53 62.3
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 4.1e-08 61.2 53 60.4
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 4.1e-08 61.2 53 58.5
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 4.1e-08 61.2 53 60.4
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 4.1e-08 61.2 53 60.4
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 60.4
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.4e-08 60.8 53 58.5
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 7.1e-08 60.5 53 58.5
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 7.1e-08 60.5 53 56.6
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 7.1e-08 60.5 53 58.5
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 7.1e-08 60.5 53 58.5
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 7.1e-08 60.5 53 60.4
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 7.1e-08 60.5 32 87.5
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 7.1e-08 60.5 52 59.6
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 9.2e-08 60.1 53 56.6
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 9.2e-08 60.1 53 58.5
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 60.4
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.2e-07 59.7 53 56.6
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.6e-07 59.3 53 56.6
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.6e-07 59.3 53 54.7
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.6e-07 59.3 53 56.6
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.6e-07 59.3 32 84.4
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 1.6e-07 59.3 53 54.7
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.1e-07 58.9 53 54.7
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.1e-07 58.9 53 54.7
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 2.1e-07 58.9 53 56.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 2.1e-07 58.9 53 56.6
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 2.1e-07 58.9 53 56.6
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 2.1e-07 58.9 53 56.6
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 2.1e-07 58.9 32 87.5
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 2.7e-07 58.5 53 60.4
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 2.7e-07 58.5 53 60.4
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 2.7e-07 58.5 53 60.4
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.7e-07 58.5 54 55.6
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 2.7e-07 58.5 53 60.4
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 2.7e-07 58.5 76 46.1
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 3.5e-07 58.2 52 55.8
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.5e-07 58.2 53 58.5
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 3.5e-07 58.2 53 56.6
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.5e-07 58.2 53 52.8
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.5e-07 58.2 32 81.2
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.5e-07 58.2 53 52.8
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.5e-07 58.2 54 53.7
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 4.6e-07 57.8 53 54.7
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 4.6e-07 57.8 53 54.7
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 4.6e-07 57.8 53 56.6
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 4.6e-07 57.8 53 58.5
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 6.0e-07 57.4 53 52.8
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 6.0e-07 57.4 53 52.8
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 6.0e-07 57.4 53 56.6
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 6.0e-07 57.4 30 86.7
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 6.0e-07 57.4 41 80.5
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 6.0e-07 57.4 53 56.6
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 7.8e-07 57.0 32 81.2
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 7.8e-07 57.0 53 54.7
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 7.8e-07 57.0 32 81.2
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.0e-06 56.6 31 80.6
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.0e-06 56.6 31 80.6
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.0e-06 56.6 53 54.7
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.0e-06 56.6 53 54.7
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.0e-06 56.6 52 55.8
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 1.3e-06 56.2 52 53.8
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.3e-06 56.2 52 53.8
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.3e-06 56.2 53 54.7
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 1.3e-06 56.2 52 53.8
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.3e-06 56.2 53 54.7
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.7e-06 55.8 56 51.8
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 2.3e-06 55.5 52 53.8
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 2.3e-06 55.5 52 55.8
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 2.3e-06 55.5 31 87.1
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 3.0e-06 55.1 53 56.6
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 3.9e-06 54.7 53 54.7
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 3.9e-06 54.7 32 81.2
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 3.9e-06 54.7 32 81.2
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 5.1e-06 54.3 52 51.9
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 5.1e-06 54.3 53 52.8
DCAR_027695 Daucus carota HOM05D003093 ORTHO05D004301 5.1e-06 54.3 32 81.2
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 6.6e-06 53.9 53 54.7
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 6.6e-06 53.9 53 54.7
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 6.6e-06 53.9 32 75.0
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 8.6e-06 53.5 52 53.8


User provided reference genes

Program Settings