Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g110280 Pisum sativum HOM05D003704 ORTHO05D005892 1.2e-42 176.0 85 100.0
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 5.3e-30 134.0 76 82.9
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 6.9e-30 133.7 68 94.1
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 1.2e-29 132.9 68 91.2
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 1.3e-28 129.4 76 81.6
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 2.9e-28 128.3 71 83.1
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 2.9e-28 128.3 71 83.1
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 4.9e-28 127.5 71 83.1
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 8.4e-28 126.7 74 78.4
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 8.4e-28 126.7 68 85.3
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 1.9e-27 125.6 71 78.9
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 2.4e-27 125.2 71 80.3
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 4.2e-27 124.4 71 80.3
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 4.2e-27 124.4 71 78.9
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 5.5e-27 124.0 71 78.9
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 7.1e-27 123.6 71 76.1
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 7.1e-27 123.6 71 76.1
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 7.1e-27 123.6 71 76.1
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 7.1e-27 123.6 71 81.7
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 9.3e-27 123.2 71 77.5
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 9.3e-27 123.2 74 74.3
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 9.3e-27 123.2 71 77.5
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 9.3e-27 123.2 71 77.5
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 9.3e-27 123.2 71 77.5
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 1.2e-26 122.9 71 76.1
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 1.6e-26 122.5 71 77.5
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.6e-26 122.5 71 80.3
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 1.6e-26 122.5 71 80.3
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 1.6e-26 122.5 71 77.5
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 2.1e-26 122.1 71 74.6
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 2.1e-26 122.1 73 76.7
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 2.1e-26 122.1 71 77.5
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 2.7e-26 121.7 71 74.6
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 2.7e-26 121.7 68 79.4
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 2.7e-26 121.7 70 78.6
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 3.5e-26 121.3 71 78.9
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 3.5e-26 121.3 67 83.6
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 4.6e-26 120.9 68 77.9
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 4.6e-26 120.9 68 77.9
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 6.0e-26 120.6 71 76.1
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 6.0e-26 120.6 71 77.5
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 1.0e-25 119.8 71 78.9
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 1.0e-25 119.8 71 78.9
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 1.0e-25 119.8 72 77.8
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 1.0e-25 119.8 71 78.9
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 1.3e-25 119.4 71 77.5
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 1.3e-25 119.4 71 77.5
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 1.8e-25 119.0 68 80.9
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 1.8e-25 119.0 71 74.6
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 1.8e-25 119.0 71 74.6
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 1.8e-25 119.0 71 74.6
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 2.3e-25 118.6 71 77.5
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 3.0e-25 118.2 75 69.3
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 3.9e-25 117.9 67 80.6
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 3.9e-25 117.9 71 76.1
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 5.1e-25 117.5 71 74.6
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 5.1e-25 117.5 68 79.4
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 5.1e-25 117.5 68 75.0
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 5.1e-25 117.5 71 74.6
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 5.1e-25 117.5 71 74.6
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 6.7e-25 117.1 64 81.2
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 6.7e-25 117.1 71 73.2
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 6.7e-25 117.1 71 73.2
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 6.7e-25 117.1 72 77.8
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 6.7e-25 117.1 71 71.8
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 6.7e-25 117.1 72 76.4
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 8.7e-25 116.7 71 76.1
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 8.7e-25 116.7 74 71.6
HPP92_001561 Vanilla planifolia HOM05D003704 ORTHO05D005892 8.7e-25 116.7 71 74.6
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 1.1e-24 116.3 71 73.2
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 1.1e-24 116.3 67 79.1
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 1.5e-24 115.9 68 73.5
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 1.5e-24 115.9 67 77.6
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.5e-24 115.9 71 73.2
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 1.5e-24 115.9 71 74.6
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 2.5e-24 115.2 72 75.0
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.5e-24 115.2 72 75.0
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.5e-24 115.2 72 75.0
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.5e-24 115.2 72 75.0
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 2.5e-24 115.2 70 75.7
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 2.5e-24 115.2 67 79.1
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 3.3e-24 114.8 73 69.9
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 3.3e-24 114.8 71 71.8
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 3.3e-24 114.8 74 70.3
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 4.3e-24 114.4 71 71.8
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 4.3e-24 114.4 71 71.8
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 5.6e-24 114.0 67 79.1
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 5.6e-24 114.0 67 74.6
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 5.6e-24 114.0 75 65.3
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 7.4e-24 113.6 74 74.3
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 7.4e-24 113.6 74 74.3
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 7.4e-24 113.6 71 73.2
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 9.6e-24 113.2 76 67.1
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 1.6e-23 112.5 76 71.1
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 1.6e-23 112.5 76 71.1
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 2.1e-23 112.1 71 73.2
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 2.1e-23 112.1 73 69.9
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 2.1e-23 112.1 71 69.0
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 2.1e-23 112.1 71 69.0
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 3.7e-23 111.3 71 70.4
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 3.7e-23 111.3 76 69.7
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 8.2e-23 110.2 67 74.6
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.4e-22 108.6 67 77.6
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 2.4e-22 108.6 71 70.4
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 5.3e-22 107.5 71 67.6
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 5.3e-22 107.5 76 68.4
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 6.9e-22 107.1 71 67.6
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 9.0e-22 106.7 72 68.1
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 1.2e-21 106.3 60 75.0
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 1.2e-21 106.3 72 69.4
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 2.6e-21 105.1 68 69.1
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 3.4e-21 104.8 68 70.6
Lalb_Chr10g0094791 Lupinus albus HOM05D003704 ORTHO05D028681 9.3e-19 96.7 59 78.0
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 1.0e-17 93.2 58 69.0
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 1.0e-17 93.2 76 65.8
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 1.3e-17 92.8 58 70.7
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 3.1e-14 81.6 61 67.2
RcHm_v2.0_Chr1g0320051 Rosa chinensis HOM05D003704 ORTHO05D005892 1.3e-12 76.3 50 74.0
QL01p034783 Quercus lobata HOM05D003704 ORTHO05D005892 1.0e-09 66.6 45 71.1
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 3.9e-09 64.7 44 70.5
MCO01G629 Micromonas commoda HOM05D003704 ORTHO05D005892 2.5e-08 62.0 52 53.8
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.1e-06 56.6 32 75.0
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 6.9e-06 53.9 63 41.3


User provided reference genes

Program Settings