Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 0.0e+00 1540.4 812 100.0
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 0.0e+00 1308.5 812 82.1
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 0.0e+00 1277.3 812 80.8
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 0.0e+00 1185.2 813 75.6
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 0.0e+00 1169.5 813 74.7
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 0.0e+00 1161.7 813 73.4
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 0.0e+00 1122.5 816 72.5
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 0.0e+00 1106.3 816 71.0
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 0.0e+00 1099.3 812 72.5
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 0.0e+00 1093.2 830 69.2
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.0e-267 926.0 866 58.9
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 2.2e-266 922.5 697 71.3
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 1.3e-263 913.3 861 58.4
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 8.0e-261 904.0 861 58.0
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 8.9e-260 900.6 918 55.2
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 4.3e-246 855.1 862 57.5
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 3.6e-245 852.0 880 54.4
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 5.8e-243 844.7 875 55.3
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 5.8e-243 844.7 854 54.6
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.3e-242 843.6 863 55.7
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 1.4e-241 840.1 826 56.8
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 3.5e-240 835.5 856 55.1
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 3.5e-240 835.5 856 56.3
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 2.3e-239 832.8 856 56.1
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 3.9e-239 832.0 865 56.2
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.6e-237 826.6 873 54.0
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.8e-237 825.9 828 56.2
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.4e-236 823.5 872 54.7
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 8.9e-236 820.8 865 53.2
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 4.9e-234 815.1 876 53.3
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 6.4e-234 814.7 828 55.3
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 2.4e-233 812.8 829 55.6
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 9.3e-233 810.8 863 53.4
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.1e-231 805.1 850 53.8
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 8.7e-231 804.3 842 53.2
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 1.3e-229 800.4 850 54.8
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 2.8e-229 799.3 866 53.1
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 1.1e-228 797.3 886 51.4
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.1e-228 797.3 867 52.4
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.5e-227 793.5 857 52.3
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.2e-225 785.8 877 52.2
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 4.2e-225 785.4 877 52.2
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 4.6e-224 781.9 830 53.3
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 3.0e-223 779.2 830 54.1
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 5.1e-223 778.5 830 53.0
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.1e-222 777.3 830 52.9
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.9e-222 776.5 900 50.9
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.3e-221 773.9 885 51.6
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.6e-221 773.5 832 52.9
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 5.3e-220 768.5 849 53.7
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 5.3e-220 768.5 825 53.1
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.2e-219 767.3 876 50.0
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 4.5e-219 765.4 825 52.7
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 7.6e-219 764.6 852 52.3
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 1.3e-218 763.8 871 51.5
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 3.8e-218 762.3 867 51.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 6.4e-218 761.5 840 52.1
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.6e-216 756.9 884 49.4
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.3e-215 753.8 848 52.7
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.8e-215 753.4 742 56.1
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 5.1e-215 751.9 829 50.9
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 5.1e-215 751.9 834 52.5
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 8.7e-215 751.1 838 51.7
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 2.5e-214 749.6 822 52.7
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 8.1e-213 744.6 823 52.2
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 5.3e-212 741.9 860 50.7
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 9.0e-212 741.1 887 49.8
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.0e-211 740.0 855 49.1
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 3.4e-211 739.2 884 48.9
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 3.4e-211 739.2 845 51.6
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 7.6e-211 738.0 829 50.9
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.8e-207 726.9 827 51.6
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.2e-203 714.1 836 51.7
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.0e-202 711.1 735 53.7
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 2.9e-202 709.5 833 52.1
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 7.2e-201 704.9 828 51.1
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 1.0e-199 701.0 825 50.9
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 4.8e-197 692.2 893 47.5
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.1e-196 689.5 830 48.8
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 2.0e-195 686.8 843 49.3
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 3.4e-195 686.0 829 50.8
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 7.7e-195 684.9 723 54.5
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 8.5e-194 681.4 856 47.9
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.6e-192 675.6 853 47.4
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.0e-191 674.5 878 46.8
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 8.8e-191 671.4 833 46.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.0e-190 670.2 845 48.5
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.6e-190 669.8 865 46.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 5.7e-190 668.7 833 46.9
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.9e-185 653.7 873 45.5
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 3.9e-183 646.0 838 47.3
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.1e-180 637.9 825 45.9
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 9.4e-177 624.8 838 44.9
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 5.2e-175 619.0 871 42.8
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 2.0e-171 607.1 686 50.7
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 9.4e-169 598.2 699 50.9
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 4.1e-164 582.8 416 73.6
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 2.7e-163 580.1 850 42.7
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.6e-160 570.9 674 49.1
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 5.7e-158 562.4 602 51.5
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 7.5e-158 562.0 919 39.5
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 6.6e-154 548.9 620 50.6
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 4.6e-139 499.6 906 36.6
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.5e-137 493.8 807 37.2
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.3e-137 493.4 815 37.5
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 2.1e-128 464.2 772 38.5
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 3.6e-128 463.4 955 34.9
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.6e-113 412.9 481 48.4
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.2e-94 352.1 812 35.0
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 2.1e-91 341.3 1044 27.6
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 4.4e-49 200.7 435 30.3
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.2e-41 176.0 341 31.1
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 6.3e-40 170.2 340 34.1
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 5.2e-34 150.6 154 52.6
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.6e-28 130.6 336 28.0
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.8e-26 125.6 139 47.5
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.3e-24 119.4 275 30.2
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 6.2e-19 100.5 81 64.2
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 2.7e-14 85.1 98 51.0
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 3.5e-14 84.7 85 54.1
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.6e-12 77.4 94 36.2
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 5.2e-10 70.9 100 41.0


User provided reference genes

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