Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 6.1e-123 444.1 216 100.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.1e-79 298.5 216 69.0
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.1e-68 263.8 213 60.1
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 3.3e-68 262.3 213 59.6
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.3e-68 261.9 213 60.1
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 9.5e-68 260.8 213 59.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.0e-66 257.3 213 58.7
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.8e-66 256.5 211 58.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.3e-66 256.1 213 57.7
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.5e-65 253.4 214 58.9
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 4.4e-65 251.9 213 57.3
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.4e-64 248.1 213 58.2
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.4e-64 248.1 213 58.2
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.4e-64 248.1 213 58.2
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 5.4e-63 245.0 204 57.8
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.3e-60 235.7 211 53.1
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 3.3e-60 235.7 213 53.5
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 7.3e-60 234.6 213 53.5
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 9.5e-60 234.2 213 52.6
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.1e-59 233.0 213 53.5
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.8e-59 232.6 208 53.8
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 3.6e-59 232.3 213 53.1
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-58 230.7 211 51.7
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.8e-58 229.9 211 51.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.8e-58 229.9 213 51.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 4.0e-58 228.8 213 52.1
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.2e-57 227.3 211 53.6
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.2e-57 227.3 211 51.7
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.5e-57 226.9 213 48.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.0e-57 226.5 211 50.2
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 2.6e-57 226.1 211 50.2
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.4e-57 225.7 211 51.7
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.4e-57 225.7 211 51.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.4e-57 225.3 211 49.8
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 5.8e-57 224.9 211 49.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.7e-56 223.4 211 49.8
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.9e-56 222.6 206 50.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.7e-56 222.2 211 49.8
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 6.4e-56 221.5 211 51.2
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 6.4e-56 221.5 211 50.2
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 8.3e-56 221.1 211 51.2
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.4e-55 220.3 211 50.7
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.4e-55 220.3 213 51.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.4e-55 220.3 211 50.2
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.9e-55 219.9 211 50.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.9e-55 219.9 211 49.8
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.2e-55 219.2 248 46.0
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.2e-55 219.2 248 46.0
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 7.1e-55 218.0 212 51.9
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 9.2e-55 217.6 211 49.8
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-54 217.2 211 48.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.6e-54 216.9 211 48.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.7e-54 216.1 206 50.0
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.5e-54 215.7 214 49.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.6e-54 215.3 212 50.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.6e-54 215.3 211 49.3
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 6.0e-54 214.9 214 49.1
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.0e-53 214.2 212 49.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-53 213.8 211 47.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.7e-53 213.4 211 48.3
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.0e-53 212.6 244 44.7
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.9e-53 212.2 212 48.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.6e-53 211.5 211 46.9
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 8.6e-53 211.1 211 46.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 8.6e-53 211.1 211 46.4
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.6e-53 211.1 212 48.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-52 210.7 211 47.9
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.1e-52 210.7 211 49.8
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-52 210.7 212 48.1
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.9e-52 209.9 230 47.8
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.9e-52 209.9 213 50.2
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.5e-52 209.5 211 46.9
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.3e-52 209.1 190 53.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.3e-52 208.8 211 46.4
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.3e-52 208.0 211 45.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 9.5e-52 207.6 211 46.4
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.6e-51 206.8 208 51.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.1e-51 206.5 211 46.9
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.8e-51 206.1 213 47.9
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.8e-51 206.1 206 46.1
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 2.8e-51 206.1 212 46.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.8e-51 206.1 211 47.4
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.6e-51 205.7 214 48.1
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 8.1e-51 204.5 206 46.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 3.1e-50 202.6 211 46.9
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.2e-50 201.8 211 45.5
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 6.8e-50 201.4 239 43.9
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.5e-49 200.3 211 43.6
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.6e-49 199.5 213 45.1
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.6e-49 198.0 233 43.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.7e-48 196.8 213 44.6
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.8e-48 195.7 206 43.2
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.8e-48 195.7 211 44.1
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 6.4e-48 194.9 211 45.5
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.9e-47 193.4 211 43.6
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.9e-47 193.4 213 44.6
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 5.4e-47 191.8 211 45.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 9.2e-47 191.0 205 44.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 7.8e-46 188.0 216 43.1
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-44 183.7 203 44.8
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-44 183.3 210 41.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.2e-43 180.6 255 38.8
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-43 180.3 210 41.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.8e-42 176.8 221 40.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 8.9e-42 174.5 163 54.6
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.6e-41 172.9 158 53.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 4.4e-41 172.2 215 39.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.8e-41 171.8 161 54.0
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.8e-40 169.1 166 48.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 3.8e-40 169.1 211 40.3
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 3.8e-40 169.1 215 37.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.9e-40 168.7 200 40.0
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.4e-39 165.2 156 53.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.4e-39 165.2 156 53.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.2e-38 164.1 158 51.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.3e-37 159.8 181 48.1
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 3.9e-37 159.1 206 38.8
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.9e-36 156.8 212 41.0
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.6e-36 155.2 176 42.0
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.8e-35 152.9 204 37.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 4.8e-35 152.1 159 46.5
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-35 152.1 185 38.9
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-35 151.8 209 39.7
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-33 147.5 210 37.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.5e-33 147.1 185 36.8
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.5e-33 147.1 162 45.1
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-32 143.3 210 36.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.6e-30 137.1 133 50.4
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.0e-29 134.4 161 41.0
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.0e-29 132.9 169 37.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-29 132.1 160 41.9
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 6.7e-29 131.7 207 32.4
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.7e-29 131.7 141 44.7
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-28 131.0 133 47.4
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-27 127.1 115 53.0
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 8.1e-27 124.8 141 44.7
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-26 123.6 202 34.7
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-24 117.1 143 39.9
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.9e-24 116.3 142 43.0
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 8.4e-24 114.8 115 50.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-23 114.0 116 46.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 9.3e-23 111.3 115 47.8
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-21 107.1 126 40.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-21 106.7 126 42.9
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.7e-21 104.8 114 44.7
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 7.4e-20 101.7 108 45.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.9e-18 95.1 97 46.4
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.0e-13 81.3 69 52.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.3e-11 74.3 54 53.7
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 6.3e-11 72.0 124 35.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-10 71.2 68 44.1
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.5e-09 67.4 52 51.9
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.3e-07 58.2 52 48.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-06 57.8 74 36.5


User provided reference genes

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