Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 7.9e-236 820.1 419 100.0
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.4e-184 649.8 492 72.0
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 8.6e-166 587.4 599 56.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 4.0e-163 578.6 593 55.8
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.3e-153 547.0 597 53.9
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 4.9e-153 545.0 601 52.1
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.9e-152 543.1 597 53.6
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-152 543.1 599 54.1
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.6e-151 540.0 603 52.4
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.1e-151 539.7 473 63.0
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.7e-151 539.3 618 51.9
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.3e-150 537.0 592 52.7
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 5.6e-149 531.6 603 51.7
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.8e-147 526.6 608 50.8
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 4.4e-146 521.9 572 51.0
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 4.4e-146 521.9 591 52.1
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 6.4e-145 518.1 563 53.1
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.1e-144 517.3 564 52.1
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.1e-144 517.3 649 48.4
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 1.1e-144 517.3 578 51.6
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.4e-144 516.9 573 53.1
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 7.1e-144 514.6 558 52.3
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 9.2e-144 514.2 607 50.6
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.6e-143 513.5 586 51.5
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 2.3e-142 509.6 604 49.7
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 2.3e-142 509.6 586 50.2
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 3.0e-142 509.2 574 50.9
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.9e-141 506.5 530 54.0
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.9e-141 506.5 558 52.0
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 3.3e-141 505.8 590 49.8
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 4.3e-141 505.4 591 50.3
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.6e-140 503.4 598 49.8
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.1e-140 503.1 598 50.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 8.1e-140 501.1 601 49.1
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 6.9e-139 498.0 595 48.7
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.6e-138 496.1 567 51.7
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 6.4e-137 491.5 596 50.2
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 8.4e-137 491.1 638 46.2
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 2.7e-135 486.1 595 49.1
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 4.6e-135 485.3 620 47.1
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.7e-134 483.4 586 49.3
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.5e-133 479.6 615 46.8
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.8e-131 473.4 581 50.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.1e-131 472.6 483 54.7
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 9.0e-131 471.1 586 49.0
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.3e-129 467.2 610 47.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.7e-129 466.8 538 52.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.1e-127 459.9 572 48.6
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 2.1e-127 459.9 475 54.3
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 6.0e-127 458.4 660 44.8
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 7.9e-127 458.0 593 47.0
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.0e-126 457.6 595 46.7
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 8.7e-126 454.5 549 49.0
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 2.8e-124 449.5 535 49.5
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 4.8e-124 448.7 586 46.2
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 1.8e-123 446.8 578 46.4
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 2.4e-123 446.4 500 53.2
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 4.5e-122 442.2 526 49.8
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 5.8e-122 441.8 587 47.9
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 7.6e-122 441.4 604 45.2
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 7.6e-122 441.4 547 47.9
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.2e-121 439.9 479 52.4
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.8e-121 439.1 587 47.4
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 8.4e-121 438.0 588 46.6
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 4.2e-120 435.6 497 50.3
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 5.5e-120 435.3 557 48.7
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 5.5e-120 435.3 587 47.5
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.1e-120 434.9 587 46.3
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.1e-119 433.3 561 48.1
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.7e-119 433.0 561 48.0
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.5e-119 432.6 546 47.6
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.0e-118 431.0 593 45.5
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.0e-118 431.0 601 45.4
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.3e-118 429.9 588 45.9
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 3.9e-118 429.1 601 45.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.1e-118 428.7 496 52.4
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.5e-117 427.2 561 47.4
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.5e-117 427.2 561 47.4
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.5e-117 427.2 561 47.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.9e-117 426.8 596 45.6
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 3.1e-115 419.5 766 38.5
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.2e-114 417.5 583 46.1
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.5e-114 417.2 517 48.2
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 8.4e-113 411.4 569 44.6
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.1e-110 402.1 552 45.8
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 4.5e-106 389.0 526 46.8
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.9e-102 375.9 520 45.2
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.5e-101 373.2 456 52.0
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 3.1e-99 366.3 569 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.6e-93 346.7 446 44.8
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.7e-92 344.0 531 41.8
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 5.3e-91 339.0 226 75.7
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.5e-90 335.9 224 74.1
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 5.2e-86 322.4 514 41.2
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 3.5e-82 309.7 443 44.0
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.3e-81 307.8 579 36.4
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 4.1e-75 286.2 546 35.3
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.2e-68 263.8 404 40.3
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.7e-68 263.1 390 41.8
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.6e-66 257.7 224 61.6
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.3e-64 250.0 196 67.9
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.8e-62 244.2 171 72.5
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 5.2e-62 242.7 405 42.7
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 4.4e-61 239.6 459 36.4
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.9e-60 236.1 169 71.0
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 4.5e-58 229.6 164 72.0
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.6e-55 219.9 135 81.5
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.7e-55 219.5 178 62.4
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 6.1e-55 219.2 199 58.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.2e-53 214.9 146 74.0
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 6.4e-52 209.1 575 31.0
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.4e-51 208.0 186 59.7
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 5.4e-51 206.1 377 37.9
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.0e-49 201.8 245 44.1
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.3e-49 201.4 166 65.1
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.4e-46 191.4 176 56.2
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 6.8e-46 189.1 431 34.8
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 6.4e-44 182.6 190 51.6
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 4.1e-43 179.9 203 51.7
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.0e-41 175.3 172 52.3
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.9e-40 171.0 143 60.1
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.9e-36 157.1 158 56.3
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.9e-36 157.1 146 56.2
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.4e-35 154.8 101 82.2
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 9.2e-35 152.1 141 59.6
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.8e-31 140.6 116 61.2
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 4.7e-31 139.8 383 30.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 6.8e-30 136.0 81 81.5
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.1e-27 128.6 156 47.4
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 8.7e-25 119.0 208 36.1
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.2e-23 112.8 75 80.0
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.5e-21 108.2 149 43.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.2e-20 104.4 52 92.3
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 8.4e-20 102.4 58 81.0
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.9e-19 101.3 267 31.5
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 6.0e-18 96.3 56 76.8
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.5e-16 91.7 54 83.3
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.6e-15 88.2 56 73.2
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.2e-12 77.8 118 42.4
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 8.1e-07 59.3 47 61.7
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.8e-06 58.2 75 46.7


User provided reference genes

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