Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 0.0e+00 1261.1 712 100.0
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.6e-260 902.9 721 74.5
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.4e-253 879.0 722 73.3
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 6.7e-219 764.6 732 64.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.3e-206 723.8 728 62.1
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.2e-206 723.0 728 62.1
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.7e-201 706.8 719 56.1
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 9.1e-200 701.0 717 54.7
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.4e-195 687.2 735 59.3
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.1e-194 684.1 717 53.7
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.5e-194 683.7 718 55.0
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.5e-190 668.3 706 60.3
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.6e-186 656.4 711 53.9
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.5e-183 646.0 718 53.6
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.1e-181 641.0 729 51.0
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.2e-181 639.4 714 51.8
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 8.0e-180 634.8 750 50.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.3e-178 629.4 768 48.7
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 7.5e-178 628.2 700 51.9
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.7e-177 627.1 789 49.2
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.1e-176 624.4 783 47.3
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.4e-176 624.0 753 49.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.1e-176 622.9 782 49.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.2e-173 612.8 766 49.1
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 4.2e-173 612.5 775 48.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 5.5e-173 612.1 721 50.2
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 6.1e-172 608.6 732 49.0
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 8.0e-172 608.2 761 48.5
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 8.0e-172 608.2 765 49.2
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.4e-171 607.4 729 50.6
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.5e-170 604.0 757 49.1
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.0e-170 603.6 708 55.5
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.4e-170 602.8 772 47.7
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 5.7e-170 602.1 768 47.4
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 5.7e-170 602.1 778 48.2
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.7e-169 600.5 717 50.8
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 4.8e-169 599.0 760 46.8
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 1.4e-168 597.4 777 48.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.4e-168 597.4 790 47.5
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 4.1e-168 595.9 765 48.5
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.4e-168 595.5 723 49.7
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 1.0e-166 591.3 778 47.2
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.5e-165 585.5 736 48.9
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.2e-164 584.3 721 50.2
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 8.0e-164 581.6 701 49.8
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 2.3e-163 580.1 706 49.2
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.6e-162 576.6 777 47.1
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.6e-162 576.6 701 48.8
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 6.3e-161 572.0 722 48.2
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 6.3e-161 572.0 763 47.4
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 8.3e-161 571.6 714 49.2
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.1e-160 571.2 726 49.3
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.4e-160 570.1 679 49.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.1e-157 561.2 727 48.0
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 9.5e-157 558.1 717 46.3
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.8e-155 553.9 724 47.0
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 3.1e-155 553.1 719 47.0
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.1e-155 553.1 761 44.9
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 1.2e-154 551.2 703 47.5
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 9.8e-154 548.1 782 44.4
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.6e-151 540.8 700 48.0
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 4.6e-151 539.3 708 46.6
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 1.7e-150 537.3 708 46.3
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.0e-150 536.6 700 48.0
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 3.0e-150 536.6 765 44.8
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.5e-149 534.3 727 46.9
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.9e-149 533.9 803 42.5
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.2e-148 531.2 722 45.0
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 4.7e-148 529.3 780 44.1
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 8.0e-148 528.5 818 41.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.1e-147 526.6 848 42.0
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.9e-147 525.0 811 42.3
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.9e-144 517.3 723 45.8
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.6e-143 514.2 700 45.6
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 3.9e-142 509.6 707 45.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 3.3e-141 506.5 707 44.6
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 6.2e-140 502.3 703 44.8
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 8.3e-137 491.9 741 42.9
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.3e-137 491.9 621 48.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 4.2e-128 463.0 727 41.5
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 2.1e-127 460.7 767 40.7
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.7e-127 460.3 785 41.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 7.8e-127 458.8 796 40.7
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 5.1e-126 456.1 826 38.7
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 5.1e-126 456.1 784 39.7
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 6.6e-126 455.7 788 40.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 6.6e-126 455.7 674 44.1
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.2e-122 444.9 696 41.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 9.3e-120 435.3 514 50.4
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 2.1e-119 434.1 810 38.8
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.7e-118 431.0 670 43.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 3.3e-117 426.8 697 39.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.8e-116 422.9 700 39.3
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 5.8e-114 416.0 906 36.1
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-113 414.8 716 39.8
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.2e-106 391.7 550 47.5
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 2.0e-106 391.0 880 35.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 4.5e-106 389.8 906 33.6
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 7.6e-106 389.0 875 34.9
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 7.6e-106 389.0 709 39.1
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.0e-105 388.7 905 33.4
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.4e-91 341.7 874 33.5
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 8.5e-89 332.4 778 33.9
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.8e-84 317.4 739 34.4
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.3e-84 316.2 718 35.7
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 5.9e-82 309.7 715 35.2
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 9.4e-80 302.4 695 34.5
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.2e-68 262.7 721 32.2
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 4.2e-64 250.4 270 50.7
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.7e-60 238.4 744 27.6
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 6.3e-60 236.5 356 44.4
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.1e-59 234.2 684 31.3
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 9.1e-59 232.6 272 47.4
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.0e-54 217.6 688 32.1
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.7e-52 210.7 412 37.6
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.5e-48 198.7 698 25.9
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 4.7e-47 193.7 900 25.1
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.8e-43 181.8 705 30.8
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 4.6e-42 177.2 219 45.7
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.0e-41 173.7 176 51.1
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 5.0e-41 173.7 176 51.1
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 8.9e-38 162.9 316 32.9
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.1e-31 141.7 125 60.0
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.2e-29 136.0 82 79.3
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.4e-29 134.4 200 39.0
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 6.4e-28 130.2 241 39.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 8.6e-25 119.8 144 47.9
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.5e-18 97.8 91 57.1
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 7.8e-18 96.7 110 43.6
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 6.6e-17 93.6 100 45.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-16 92.4 90 54.4
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 9.6e-08 63.2 211 32.2


User provided reference genes

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