Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 0.0e+00 1107.0 539 100.0
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 3.2e-290 1001.1 540 90.4
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 1.6e-289 998.8 594 84.2
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.9e-287 991.9 549 88.7
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.9e-285 983.4 575 84.9
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.5e-284 982.2 562 86.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 6.1e-281 970.3 539 87.0
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 2.4e-277 958.4 537 86.0
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 3.4e-276 954.5 539 84.2
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 7.7e-276 953.4 538 85.1
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 2.9e-275 951.4 538 84.6
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 1.4e-274 949.1 536 85.4
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 1.9e-274 948.7 538 84.2
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 1.0e-272 943.0 536 83.0
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 3.9e-272 941.0 537 85.1
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 5.7e-271 937.2 536 81.9
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.7e-270 935.6 536 82.8
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.4e-269 931.8 541 82.3
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 2.4e-269 931.8 536 83.4
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 4.1e-269 931.0 536 83.6
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 6.9e-269 930.2 536 81.5
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 9.1e-269 929.9 536 83.6
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.2e-268 929.5 538 82.5
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 2.0e-268 928.7 536 83.0
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 2.6e-268 928.3 557 81.7
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 4.5e-268 927.5 562 79.2
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 4.5e-268 927.5 536 83.2
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 7.7e-268 926.8 536 83.2
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.7e-267 925.6 540 82.2
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.1e-266 922.9 544 81.6
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 2.5e-266 921.8 536 83.4
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 3.2e-266 921.4 538 81.8
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 3.2e-266 921.4 536 82.6
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 9.4e-266 919.8 517 84.1
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 2.3e-264 915.2 541 81.3
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 6.7e-264 913.7 536 81.7
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.1e-263 912.9 536 81.7
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 1.1e-263 912.9 536 80.6
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.1e-263 912.9 549 80.7
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 3.3e-263 911.4 536 81.5
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 4.4e-263 911.0 536 82.1
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 2.2e-262 908.7 536 80.4
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.8e-262 908.3 536 81.0
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 4.8e-262 907.5 536 81.3
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 1.1e-261 906.4 536 81.2
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.1e-261 904.8 536 80.2
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.6e-260 902.5 523 81.5
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 2.6e-260 901.7 534 80.1
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 2.6e-260 901.7 536 80.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 4.5e-260 901.0 536 79.9
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 7.7e-260 900.2 534 81.5
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 7.7e-260 900.2 534 80.5
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.0e-259 899.8 536 81.7
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.0e-259 899.8 536 80.2
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.7e-259 899.0 524 83.4
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.2e-259 898.7 536 81.5
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 5.0e-259 897.5 533 79.5
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.9e-258 895.6 540 79.3
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 9.4e-258 893.3 533 80.1
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 9.4e-258 893.3 590 74.4
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.6e-257 892.5 543 80.3
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.6e-257 892.5 533 79.7
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 3.6e-257 891.3 538 79.9
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 1.0e-256 889.8 517 83.0
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 2.2e-254 882.1 540 79.4
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 4.8e-254 880.9 539 79.6
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 6.3e-254 880.6 541 79.1
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 2.4e-253 878.6 538 78.4
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 7.0e-253 877.1 539 78.7
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 2.7e-252 875.2 539 78.7
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 4.5e-252 874.4 536 78.4
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.9e-252 874.0 539 78.5
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.3e-251 872.8 518 79.9
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 8.5e-251 870.2 526 78.1
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 8.5e-251 870.2 542 77.9
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 1.5e-250 869.4 542 77.1
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-249 866.3 519 79.2
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.2e-249 866.3 519 79.2
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 2.1e-249 865.5 539 77.4
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 2.3e-248 862.1 535 77.8
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.3e-248 862.1 506 81.0
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 2.3e-248 862.1 536 77.4
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 3.0e-248 861.7 535 77.9
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 3.0e-248 861.7 535 77.8
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 6.8e-248 860.5 536 77.4
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 5.7e-247 857.4 514 80.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 4.8e-246 854.4 470 85.3
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 1.4e-245 852.8 541 77.3
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 7.0e-245 850.5 538 77.3
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 9.1e-245 850.1 540 75.9
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 4.5e-244 847.8 547 75.7
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.8e-243 844.7 527 78.4
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 8.6e-243 843.6 540 75.7
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 7.8e-236 820.5 563 72.1
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.3e-235 819.7 482 79.5
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 5.0e-235 817.8 546 74.4
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 6.6e-235 817.4 561 72.9
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 3.3e-234 815.1 546 74.4
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-233 812.8 561 72.5
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 6.1e-233 810.8 530 73.6
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 2.3e-232 808.9 539 73.5
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 2.9e-230 802.0 536 72.8
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.6e-228 796.2 538 71.9
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 9.5e-218 760.4 476 75.2
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 5.2e-216 754.6 538 67.5
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.7e-214 749.6 531 69.3
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 9.5e-210 733.8 415 81.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 1.2e-209 733.4 398 83.9
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 3.8e-206 721.8 433 80.1
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 1.9e-205 719.5 447 76.5
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 2.4e-200 702.6 408 83.6
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 7.6e-191 671.0 519 66.7
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.5e-186 656.8 401 75.8
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.9e-179 632.1 331 87.0
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 4.2e-157 558.9 470 58.1
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 8.8e-155 551.2 402 68.7
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.7e-153 547.0 283 89.8
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 9.1e-152 541.2 415 66.7
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.5e-151 540.4 468 56.2
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.8e-136 490.3 346 69.1
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.7e-135 486.5 398 59.8
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 8.0e-132 474.9 451 52.8
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 1.0e-131 474.6 463 51.6
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 5.9e-127 458.8 338 69.2
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 8.0e-108 395.2 270 71.9
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.0e-106 390.6 232 85.8
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 8.6e-102 375.2 184 97.3
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.1e-83 315.1 181 81.8
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.4e-73 279.3 172 75.0
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.2e-55 221.9 135 74.8
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.1e-45 188.7 117 79.5
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 2.2e-44 184.5 102 83.3
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 9.1e-35 152.5 81 87.7
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 3.3e-29 134.0 67 91.0
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 1.2e-21 109.0 57 87.7
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 3.4e-21 107.5 59 83.1
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 3.4e-21 107.5 59 83.1
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 4.5e-18 97.1 53 83.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 5.5e-16 90.1 78 61.5
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.4e-14 85.5 50 74.0


User provided reference genes

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