Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 0.0e+00 1360.9 669 100.0
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 4.9e-296 1020.8 681 77.2
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.1e-274 949.9 672 72.3
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 8.6e-269 930.2 675 71.3
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.4e-250 869.8 690 65.2
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.4e-250 869.8 690 65.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.6e-246 854.7 729 62.6
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.3e-245 852.4 690 64.6
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.5e-236 823.2 695 61.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.4e-234 816.6 712 59.8
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.8e-234 816.2 712 59.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.9e-234 814.3 712 59.6
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.6e-233 812.4 710 60.1
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.3e-232 810.1 692 61.3
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 3.8e-232 808.5 682 62.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.1e-231 807.0 693 63.2
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.2e-231 805.4 721 58.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.2e-231 805.4 675 62.7
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 7.1e-231 804.3 690 61.4
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 9.3e-231 803.9 729 59.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.2e-230 803.5 690 61.4
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.5e-228 796.6 691 59.6
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.1e-227 792.7 657 62.4
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.1e-227 792.7 691 60.6
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.1e-226 790.4 697 60.7
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.8e-226 789.6 667 60.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.2e-225 786.9 686 59.5
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 2.0e-225 786.2 682 60.4
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 4.5e-225 785.0 686 59.3
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.1e-223 780.4 681 60.6
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 3.2e-223 778.9 692 59.1
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 4.2e-223 778.5 662 62.4
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 4.2e-223 778.5 676 59.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.6e-222 775.4 709 58.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 6.1e-222 774.6 659 62.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.0e-221 773.9 661 62.3
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.3e-221 773.5 682 59.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.8e-221 773.1 690 58.7
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.1e-220 770.4 667 60.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 2.5e-220 769.2 683 60.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.3e-220 768.8 695 59.0
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 9.7e-220 767.3 695 58.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.3e-219 766.9 697 58.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.2e-219 766.1 657 61.0
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.8e-219 765.0 686 58.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 8.2e-219 764.2 658 61.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 8.2e-219 764.2 678 59.1
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.1e-218 763.8 683 59.4
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.1e-218 763.8 681 58.9
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.1e-218 760.8 713 57.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.2e-217 760.4 661 59.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.0e-217 759.6 655 60.3
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.0e-216 757.3 667 58.5
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.7e-216 756.5 696 57.3
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.7e-216 756.5 663 60.3
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.9e-215 753.1 694 57.9
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 7.2e-215 751.1 690 58.8
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 9.4e-215 750.7 714 56.0
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.1e-214 749.6 659 61.3
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.5e-212 743.4 579 65.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.4e-210 736.9 665 58.2
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 2.4e-210 736.1 695 57.6
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 6.9e-210 734.6 680 55.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 6.9e-210 734.6 708 54.7
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 2.9e-208 729.2 666 57.7
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 3.8e-208 728.8 681 56.8
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 8.5e-208 727.6 598 62.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.9e-207 726.5 697 56.0
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 7.2e-207 724.5 665 56.1
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.1e-206 723.0 655 59.1
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.7e-206 722.6 667 56.1
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 7.9e-206 721.1 668 56.1
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 7.9e-206 721.1 668 56.1
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 7.9e-206 721.1 668 56.1
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 8.8e-205 717.6 674 55.6
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 8.8e-205 717.6 667 55.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.6e-204 716.1 661 56.0
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-204 716.1 673 55.9
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 7.4e-204 714.5 672 55.8
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.3e-203 713.8 672 55.8
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.8e-203 712.6 658 55.9
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 3.7e-203 712.2 673 55.7
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 4.8e-203 711.8 671 55.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 6.3e-203 711.4 657 56.0
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-202 710.7 661 57.8
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.4e-202 710.3 690 54.5
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.1e-202 709.1 661 57.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.5e-201 705.7 686 54.8
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.5e-201 705.3 708 52.7
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 4.5e-201 705.3 658 57.3
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.1e-199 700.7 667 54.9
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-199 699.5 657 55.6
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 4.8e-195 685.3 708 52.4
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.4e-194 683.7 708 52.7
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.2e-192 676.4 680 51.2
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 9.4e-191 671.0 668 54.0
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 4.1e-186 655.6 657 53.7
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 5.9e-185 651.7 681 53.5
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.5e-183 647.1 638 54.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.2e-183 645.6 680 51.3
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 7.2e-183 644.8 668 54.5
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.2e-182 644.0 591 56.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 4.0e-181 639.0 649 55.8
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.2e-180 637.5 589 58.6
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-179 634.0 647 55.2
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.8e-174 616.3 658 50.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-172 610.1 677 49.9
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.3e-171 607.4 692 47.0
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.7e-171 605.9 508 65.0
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.1e-170 602.4 670 48.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.3e-167 592.8 671 49.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.4e-165 587.4 688 46.9
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.3e-159 565.1 680 46.8
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.5e-156 557.4 660 46.1
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 7.1e-154 548.5 709 43.7
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 6.6e-144 515.4 464 58.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 3.6e-142 509.6 445 61.3
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.0e-136 491.5 680 42.8
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 4.3e-135 486.1 463 56.2
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.8e-134 483.4 693 41.6
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.9e-131 473.4 676 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.0e-128 463.4 592 44.3
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.1e-125 453.4 579 45.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.2e-124 451.4 400 58.2
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.9e-123 446.8 459 51.9
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.4e-123 445.3 461 51.0
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 5.3e-117 426.0 709 37.1
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 9.0e-117 425.2 454 49.6
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.2e-110 402.1 433 51.3
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.6e-108 395.6 433 50.6
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.3e-107 394.8 417 53.7
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.5e-103 381.3 677 33.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.7e-102 376.7 763 32.9
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.6e-97 361.3 335 55.2
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 6.9e-93 345.9 693 32.5
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.0e-91 342.0 450 43.6
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.2e-84 318.5 473 40.8
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 5.0e-83 313.2 655 31.9
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 6.3e-78 296.2 201 69.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.2e-75 287.7 235 62.1
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.9e-74 284.6 194 68.0
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 9.4e-74 282.3 189 72.0
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.2e-73 282.0 188 72.3
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.5e-71 275.0 174 73.6
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 4.8e-70 270.0 201 61.7
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.9e-66 258.1 189 63.5
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.9e-66 258.1 189 63.5
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.8e-60 236.1 160 68.1
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.8e-56 224.9 142 73.9
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.8e-55 219.9 183 61.2
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-48 198.4 155 60.6
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-43 182.2 107 76.6
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.2e-38 164.9 83 86.7
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 9.5e-34 149.4 116 62.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.8e-32 145.2 154 50.6
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.2e-31 142.5 116 62.1
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.6e-27 126.7 75 76.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 8.1e-25 119.8 83 67.5
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-21 109.4 122 47.5
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-21 109.4 76 69.7
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 2.1e-20 105.1 69 69.6
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 3.5e-20 104.4 154 40.9
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 4.8e-17 94.0 91 52.7
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.4e-13 82.4 50 68.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.1e-10 72.8 52 63.5
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.1e-09 68.6 108 38.9
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 8.1e-09 66.6 38 76.3
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 5.3e-08 63.9 45 64.4


User provided reference genes

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