Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 8.3e-165 583.6 282 100.0
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.5e-100 369.4 293 66.6
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 4.8e-96 355.1 287 66.2
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.8e-95 353.2 292 66.1
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-86 322.8 239 68.2
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 9.2e-71 271.2 309 50.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.9e-68 263.5 287 53.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 5.2e-66 255.4 312 50.0
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.6e-65 253.1 312 49.7
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 7.5e-65 251.5 292 50.0
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.9e-61 239.2 337 46.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.9e-60 236.9 323 48.0
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.1e-59 233.4 303 47.5
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 8.1e-59 231.5 303 47.2
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 3.7e-56 222.6 324 43.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.0e-54 215.3 349 41.3
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-50 203.8 312 42.6
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.4e-49 199.5 297 43.1
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.6e-46 190.7 356 37.6
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.9e-44 183.7 330 38.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 3.3e-44 183.0 279 44.4
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 6.2e-43 178.7 148 61.5
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.4e-42 177.6 268 38.8
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 6.8e-42 175.3 251 45.0
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.3e-40 171.0 232 43.1
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.2e-40 170.2 376 34.3
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.1e-39 167.9 249 43.8
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 2.1e-38 163.7 268 37.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 7.8e-38 161.8 282 38.3
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.9e-37 159.5 234 41.5
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 5.6e-36 155.6 276 35.9
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.3e-36 155.2 270 38.1
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 8.1e-35 151.8 246 39.8
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.4e-34 150.2 232 38.4
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 3.1e-34 149.8 341 33.7
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 5.3e-34 149.1 268 35.4
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.6e-33 146.7 257 37.4
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.4e-33 146.4 267 37.1
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 4.4e-33 146.0 246 39.4
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 4.4e-33 146.0 246 39.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 7.6e-33 145.2 307 35.2
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-32 144.4 307 34.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.7e-32 144.1 312 33.0
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.2e-32 143.7 300 34.7
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.2e-32 143.7 300 35.0
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 3.8e-32 142.9 250 36.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 8.4e-32 141.7 290 34.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.1e-31 141.4 269 33.5
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 3.2e-31 139.8 230 40.0
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 9.3e-31 138.3 295 33.6
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.2e-30 137.9 273 31.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 3.5e-30 136.3 252 36.9
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.6e-30 136.0 297 32.0
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 6.0e-30 135.6 228 38.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 6.0e-30 135.6 308 34.7
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 6.0e-30 135.6 228 39.0
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 7.9e-30 135.2 284 33.1
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.0e-29 134.8 226 39.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.3e-29 134.4 234 36.3
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 3.0e-29 133.3 230 38.3
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 3.9e-29 132.9 226 38.5
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.9e-29 132.9 168 44.6
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.1e-28 131.3 317 31.2
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.5e-28 131.0 226 38.5
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 3.3e-28 129.8 159 43.4
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 4.3e-28 129.4 282 33.3
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 9.6e-28 128.3 265 33.6
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.3e-27 127.9 294 33.0
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.6e-27 127.5 274 34.7
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.1e-27 127.1 229 38.0
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.8e-27 126.7 232 37.5
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.8e-27 126.7 180 38.9
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 2.8e-27 126.7 177 45.8
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 6.2e-27 125.6 229 38.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 8.1e-27 125.2 245 32.2
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.8e-26 124.0 279 32.3
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.8e-26 124.0 254 36.2
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.0e-26 122.9 247 35.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 4.0e-26 122.9 271 34.7
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 6.9e-26 122.1 124 55.6
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.2e-25 121.3 153 43.1
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.0e-25 120.6 250 37.2
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.0e-25 120.6 196 39.8
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 2.6e-25 120.2 279 30.5
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.6e-25 120.2 295 34.2
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 3.4e-25 119.8 307 32.9
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 4.5e-25 119.4 165 42.4
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.3e-24 117.9 294 32.3
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.3e-24 117.9 246 31.7
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.1e-23 114.8 273 33.0
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 2.4e-23 113.6 247 35.2
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 3.2e-23 113.2 248 35.5
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 4.2e-23 112.8 288 29.9
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 5.1e-21 105.9 164 39.6
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.5e-20 104.4 213 32.4
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.9e-20 104.0 280 30.0
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.6e-20 102.4 278 33.8
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.1e-18 98.2 279 33.0
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 3.1e-18 96.7 243 34.6
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.0e-18 96.3 269 30.5
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.0e-18 96.3 278 30.2
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 5.3e-18 95.9 200 31.5
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.3e-18 95.9 241 33.2
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.7e-16 90.9 239 29.3
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.2e-14 84.7 136 39.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 2.1e-14 84.0 207 32.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.8e-13 80.9 145 34.5
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 3.9e-13 79.7 159 33.3
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 5.1e-13 79.3 224 29.9
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 5.1e-13 79.3 161 37.9
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 8.7e-13 78.6 132 36.4
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-12 78.2 132 36.4
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-12 78.2 132 36.4
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.9e-12 77.4 145 33.8
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 5.7e-12 75.9 185 27.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.6e-11 74.3 151 35.8
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.6e-11 74.3 182 26.9
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 3.7e-11 73.2 115 34.8
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 3.7e-11 73.2 147 32.0
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 4.8e-11 72.8 151 34.4
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.4e-10 71.2 151 29.8
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 3.1e-10 70.1 105 42.9
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.1e-10 69.7 163 28.8
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 5.3e-10 69.3 139 36.7
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 6.9e-10 68.9 148 31.8
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 9.0e-10 68.6 153 30.7
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 9.0e-10 68.6 159 34.0
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.4e-09 66.6 148 30.4
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 4.5e-09 66.2 160 33.8
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 5.9e-09 65.9 74 51.4
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 5.9e-09 65.9 138 29.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 5.9e-09 65.9 126 38.1
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.3e-08 64.7 184 28.8
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.3e-08 64.7 147 27.9
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.7e-08 64.3 146 28.8
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.9e-08 63.5 145 29.0
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.8e-08 63.2 139 32.4
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.0e-08 62.8 148 30.4
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 5.0e-08 62.8 149 28.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 6.5e-08 62.4 220 31.4
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 8.4e-08 62.0 148 30.4
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.1e-07 61.6 148 28.4
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.4e-07 61.2 145 29.7
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.4e-07 61.2 145 30.3
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.9e-07 60.8 124 33.9
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 3.2e-07 60.1 151 30.5
PSO782G3336 Papaver somniferum HOM05D003520 ORTHO05D003332 3.2e-07 60.1 125 35.2
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 3.2e-07 60.1 125 35.2
TWI31G0695 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 3.2e-07 60.1 104 38.5
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 4.2e-07 59.7 153 27.5
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 7.2e-07 58.9 193 29.0
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 7.2e-07 58.9 195 30.8
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 9.3e-07 58.5 200 30.0
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.2e-06 58.2 123 33.3
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 1.2e-06 58.2 149 28.9
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.6e-06 57.8 174 29.9
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.7e-06 57.0 97 36.1
Thecc.05G039400 Theobroma cacao HOM05D014374 ORTHO05D020491 2.7e-06 57.0 67 44.8
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 4.6e-06 56.2 128 32.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 7.9e-06 55.5 172 27.9
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 7.9e-06 55.5 198 29.8
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 7.9e-06 55.5 198 29.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 7.9e-06 55.5 62 48.4
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 7.9e-06 55.5 125 27.2
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 7.9e-06 55.5 107 34.6


User provided reference genes

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