Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 6.1e-136 487.6 233 100.0
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-86 323.9 239 68.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-77 293.9 252 61.5
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 6.1e-67 258.5 241 57.7
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 6.3e-64 248.4 249 56.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 3.0e-58 229.6 247 53.0
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.3e-55 218.8 262 50.0
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-53 214.5 232 54.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-51 207.6 257 49.0
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 4.7e-51 205.7 258 50.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 6.3e-48 195.3 263 46.8
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 6.3e-48 195.3 263 46.8
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 7.0e-47 191.8 276 45.3
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.0e-47 191.8 281 45.6
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-46 190.3 281 45.6
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-44 184.5 301 41.9
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-42 177.9 265 44.9
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.7e-41 172.2 306 38.6
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.2e-38 164.5 228 45.6
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.6e-38 164.1 248 41.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 4.5e-38 162.5 244 41.4
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 5.9e-38 162.2 219 44.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 7.7e-38 161.8 222 45.5
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 5.5e-36 155.6 299 37.1
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.7e-35 153.3 256 37.1
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 5.2e-34 149.1 104 67.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.8e-34 148.3 328 35.1
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.1e-31 141.4 256 37.5
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.1e-31 141.4 264 37.9
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 3.1e-31 139.8 218 41.3
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 7.0e-31 138.7 261 36.0
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 7.0e-31 138.7 225 39.6
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.2e-30 137.9 262 34.7
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.0e-30 137.1 255 36.5
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.0e-30 137.1 253 36.0
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 3.5e-30 136.3 216 39.4
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 3.5e-30 136.3 239 38.1
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 5.9e-30 135.6 216 40.3
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 7.7e-30 135.2 240 37.9
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.0e-29 134.8 279 31.9
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.3e-29 134.4 244 36.1
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.7e-29 134.0 219 40.2
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 5.0e-29 132.5 218 39.9
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 8.6e-29 131.7 219 40.6
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 8.6e-29 131.7 218 39.0
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.5e-28 131.0 223 37.7
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.9e-28 130.6 213 38.0
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.5e-28 130.2 219 39.7
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 3.3e-28 129.8 219 40.2
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 4.2e-28 129.4 219 39.7
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 7.2e-28 128.6 219 39.3
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 9.5e-28 128.3 254 34.3
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 2.1e-27 127.1 256 31.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 4.7e-27 125.9 218 39.0
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 4.7e-27 125.9 252 34.5
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 4.7e-27 125.9 275 34.5
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 6.1e-27 125.6 216 39.4
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 8.0e-27 125.2 216 38.9
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.8e-26 124.0 268 32.8
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-26 123.6 216 38.9
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.0e-26 122.9 257 33.1
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 6.8e-26 122.1 219 37.4
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 8.9e-26 121.7 256 34.8
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-25 121.3 216 38.0
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.2e-25 121.3 216 38.0
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.0e-25 120.6 253 32.8
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.0e-25 120.6 239 34.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 2.0e-25 120.6 238 35.7
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.6e-25 120.2 240 32.9
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 5.7e-25 119.0 212 39.2
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 9.8e-25 118.2 312 31.1
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.7e-24 117.5 221 37.6
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 8.3e-24 115.2 135 45.2
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 8.3e-24 115.2 254 31.1
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.4e-23 114.4 131 48.9
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.4e-23 113.6 242 34.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.2e-23 113.2 251 31.1
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 7.0e-23 112.1 282 33.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.5e-22 109.8 254 32.7
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 3.5e-22 109.8 161 44.7
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 3.5e-22 109.8 230 36.5
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 5.9e-22 109.0 235 31.9
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.3e-21 107.8 249 34.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.3e-21 107.1 237 34.6
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.9e-21 106.7 159 39.0
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 3.3e-20 103.2 151 39.7
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.3e-20 103.2 108 54.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.6e-19 100.9 224 35.7
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 4.7e-19 99.4 206 31.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 3.1e-18 96.7 255 33.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 4.0e-18 96.3 193 37.3
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.6e-17 93.6 230 32.2
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 5.8e-17 92.4 162 37.7
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 9.8e-17 91.7 256 32.4
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.9e-16 90.1 268 28.4
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.4e-15 87.8 242 30.2
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.4e-15 87.8 239 29.7
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.9e-15 87.4 223 28.7
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.4e-15 87.0 221 32.1
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 2.4e-15 87.0 221 33.0
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.4e-15 85.9 136 39.7
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 9.2e-15 85.1 239 26.8
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.6e-14 84.3 223 32.3
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 6.0e-14 82.4 218 31.2
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.0e-13 80.1 166 35.5
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 6.6e-13 79.0 205 28.3
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.1e-12 78.2 265 27.2
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.1e-12 78.2 138 37.0
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 3.3e-12 76.6 95 46.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.6e-11 74.3 151 35.1
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 4.0e-10 69.7 156 35.3
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-09 67.4 129 37.2
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-09 67.4 129 37.2
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 5.8e-09 65.9 115 35.7
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 9.8e-09 65.1 48 66.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 9.8e-09 65.1 164 29.3
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.8e-09 65.1 140 30.7
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 4.9e-08 62.8 172 30.2
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.9e-08 62.8 141 31.2
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 6.4e-08 62.4 160 31.9
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.4e-08 62.4 140 29.3
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-07 61.6 141 29.1
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.9e-07 60.8 147 27.9
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.4e-07 60.5 89 44.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.4e-07 60.5 136 28.7
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 4.1e-07 59.7 127 31.5
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 4.1e-07 59.7 165 30.9
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 4.1e-07 59.7 148 30.4
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 5.4e-07 59.3 148 29.1
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 5.4e-07 59.3 126 34.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 7.1e-07 58.9 161 33.5
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 7.1e-07 58.9 189 28.0
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 7.1e-07 58.9 138 37.7
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 9.2e-07 58.5 163 31.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-06 58.2 167 31.7
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.6e-06 57.8 154 27.9
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.1e-06 57.4 185 29.2
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.1e-06 57.4 186 30.6
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.1e-06 57.4 186 30.6
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 2.1e-06 57.4 120 30.0
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.1e-06 57.4 148 31.8
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 2.7e-06 57.0 141 28.4
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 4.6e-06 56.2 143 32.2
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 6.0e-06 55.8 196 28.6
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 7.8e-06 55.5 153 32.0


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