Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1343.9 649 100.0
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1297.3 648 96.0
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1296.6 647 95.8
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1283.5 652 94.9
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1279.6 651 94.5
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1278.1 652 94.2
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1275.8 652 94.2
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1271.5 652 94.0
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1270.0 645 94.6
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1241.5 649 90.9
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1235.3 648 89.8
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1232.6 651 90.2
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1232.6 650 90.8
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1230.7 646 91.0
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1226.8 648 89.5
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1226.5 647 90.1
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1226.1 649 89.7
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1226.1 649 89.5
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1225.7 648 89.5
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1225.7 648 89.5
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1219.9 648 89.2
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1218.8 648 88.7
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1214.5 649 89.2
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1212.6 648 88.6
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1211.4 647 88.9
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1211.1 648 88.9
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1210.7 645 90.1
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1209.1 645 89.0
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1209.1 647 89.0
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 648 88.6
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 649 88.4
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1208.0 647 88.3
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1207.2 651 88.6
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1207.2 643 89.4
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1206.8 647 88.7
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1206.0 647 88.6
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1204.1 649 88.3
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1203.3 648 88.7
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1203.3 645 89.0
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 649 87.5
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1199.1 645 87.0
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 645 86.8
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 645 87.8
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1194.5 641 88.6
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 645 87.8
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 649 87.7
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 650 87.4
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 649 87.4
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 649 86.3
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 653 87.1
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 651 87.6
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 650 87.1
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 649 87.2
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 645 87.8
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 649 87.4
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 651 87.6
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 649 86.1
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 646 86.5
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 645 87.6
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 649 86.1
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 648 87.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 643 87.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 645 87.3
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 645 86.5
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 650 86.2
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 645 86.4
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 645 85.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 642 88.0
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 653 86.7
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 653 86.7
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 653 87.4
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 649 86.4
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 645 85.4
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 645 85.4
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 653 86.5
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 653 86.5
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 643 86.9
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 649 86.6
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 653 86.4
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 643 86.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 651 84.9
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 648 84.7
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 646 85.1
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 645 85.9
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1164.8 646 85.0
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 645 85.0
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 632 88.1
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 649 84.7
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 643 85.8
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 646 86.2
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 646 84.5
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 649 85.4
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 645 85.9
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 648 86.0
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1146.7 645 83.9
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 646 85.8
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1136.7 713 77.3
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 594 89.9
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1118.2 645 82.5
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1115.5 620 84.4
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1112.4 623 83.6
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1105.5 609 85.7
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1094.7 649 80.7
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 0.0e+00 1093.6 647 82.2
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 0.0e+00 1077.4 675 77.3
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.0e-303 1044.3 583 84.7
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.2e-302 1042.7 626 79.6
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.1e-300 1036.2 541 89.1
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 2.0e-299 1031.9 612 82.2
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.5e-299 1031.2 582 83.3
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.7e-298 1028.9 575 83.5
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.5e-289 998.4 605 78.0
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 6.8e-287 990.3 554 83.4
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 3.8e-253 878.2 475 86.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 8.5e-229 797.3 531 72.3
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 2.4e-207 726.1 424 84.4
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 3.8e-197 692.2 394 82.5
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 7.0e-191 671.4 581 59.2
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 4.2e-151 539.3 267 96.3
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.0e-125 453.4 584 45.5
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 4.5e-73 280.0 217 64.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.4e-69 268.5 125 96.8
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 6.8e-45 186.4 151 59.6
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 8.9e-45 186.0 108 83.3
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.0e-44 184.9 97 93.8
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 2.6e-36 157.9 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.6e-20 104.8 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.9e-19 101.3 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 3.9e-08 64.3 32 90.6


User provided reference genes

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