Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 4.6e-135 484.6 244 100.0
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.2e-112 408.7 240 81.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 7.1e-112 407.5 243 82.7
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 9.3e-112 407.1 232 86.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 2.1e-111 406.0 232 85.8
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.1e-111 406.0 238 81.5
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.5e-111 405.2 232 86.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.7e-110 402.9 242 82.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.7e-110 402.9 232 86.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-110 402.1 232 85.3
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.1e-110 401.4 240 80.4
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 5.1e-110 401.4 240 80.4
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.3e-109 398.7 240 80.0
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 9.6e-109 397.1 233 83.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.3e-108 396.7 240 79.6
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 2.8e-108 395.6 239 79.5
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.4e-107 393.3 235 80.9
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.4e-107 392.5 240 77.9
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.1e-107 392.1 244 78.7
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.2e-106 390.2 237 78.9
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.0e-106 389.4 244 77.9
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.0e-106 389.4 240 77.9
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.0e-106 389.4 243 79.4
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 4.5e-106 388.3 240 77.9
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 5.8e-106 387.9 239 77.0
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 7.6e-106 387.5 240 78.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 9.9e-106 387.1 239 79.5
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-105 386.7 240 77.1
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 6.4e-105 384.4 240 77.1
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 6.4e-105 384.4 240 77.5
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.1e-104 383.6 237 78.1
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-104 383.3 240 76.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.4e-104 383.3 244 75.8
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 3.2e-104 382.1 240 76.2
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.4e-104 381.3 240 77.1
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 9.3e-104 380.6 240 74.6
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.2e-103 380.2 240 75.8
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.2e-103 380.2 240 76.2
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.2e-103 380.2 240 75.8
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.6e-103 379.8 273 70.0
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-103 379.4 287 69.0
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.7e-103 379.0 235 77.4
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.7e-103 379.0 240 76.7
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.7e-103 379.0 343 60.3
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 4.6e-103 378.3 235 78.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 7.9e-103 377.5 243 77.0
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 7.9e-103 377.5 238 75.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 3.9e-102 375.2 232 77.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.5e-101 373.2 239 74.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.5e-101 372.5 237 75.9
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 3.3e-101 372.1 240 74.6
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 9.6e-101 370.5 245 76.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.3e-100 370.2 211 85.8
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.1e-100 369.4 243 76.5
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.8e-100 369.0 238 73.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 2.8e-100 369.0 238 74.4
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.7e-100 368.6 240 75.4
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.8e-100 368.2 236 75.0
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.8e-100 368.2 236 75.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 6.2e-100 367.9 238 73.9
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 6.2e-100 367.9 240 74.2
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.1e-99 367.1 239 74.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.1e-99 365.5 226 77.9
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 5.3e-99 364.8 233 73.4
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 6.9e-99 364.4 239 73.6
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 6.9e-99 364.4 232 75.4
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.2e-98 363.6 239 71.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.5e-98 363.2 240 73.3
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.5e-98 363.2 212 82.1
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 5.8e-98 361.3 259 69.1
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.3e-97 360.1 239 71.5
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.3e-97 360.1 212 81.1
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.2e-97 359.4 236 72.5
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.9e-97 358.2 231 74.5
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.4e-97 357.8 233 72.1
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.2e-96 355.5 239 72.4
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 9.3e-96 354.0 231 73.2
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.2e-95 353.6 240 70.8
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.0e-95 351.3 236 73.3
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 7.9e-95 350.9 239 73.6
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 72.4
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 72.4
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 72.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-94 350.1 232 72.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.9e-94 348.6 239 69.0
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.5e-93 346.7 239 69.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 2.5e-93 345.9 229 69.4
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.3e-93 345.5 239 71.5
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 7.4e-93 344.4 208 81.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.7e-92 342.0 240 70.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.8e-92 341.7 234 71.4
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.4e-91 340.1 227 72.2
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.4e-91 340.1 231 70.6
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.1e-91 339.0 195 82.6
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 5.3e-91 338.2 265 63.8
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.6e-90 335.9 239 69.0
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.6e-90 335.9 232 69.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.4e-90 335.5 239 70.3
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.0e-89 334.0 232 71.6
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 9.3e-88 327.4 201 78.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.7e-87 325.9 283 59.7
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.9e-85 319.7 201 73.6
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.5e-85 319.3 244 68.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 2.6e-82 309.3 198 73.2
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 3.8e-81 305.4 196 74.5
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.9e-78 295.4 176 78.4
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 6.7e-78 294.7 190 74.2
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 2.8e-76 289.3 239 63.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.2e-74 283.9 171 78.9
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 4.2e-72 275.4 228 57.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 6.7e-70 268.1 228 57.0
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 8.8e-70 267.7 167 75.4
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 4.4e-69 265.4 225 56.0
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.6e-63 246.9 145 80.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.0e-62 242.7 146 78.8
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.0e-54 217.6 192 55.2
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.0e-54 217.6 135 77.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-53 213.8 140 73.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-53 213.8 140 73.6
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.8e-52 208.8 123 85.4
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 4.8e-52 208.8 125 80.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 8.2e-52 208.0 123 85.4
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.0e-50 203.4 230 44.3
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.3e-49 200.7 182 57.7
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 3.2e-48 196.1 169 60.9
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 9.4e-48 194.5 126 74.6
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.6e-47 192.6 120 75.8
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 4.7e-47 192.2 130 70.8
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.8e-43 180.3 119 69.7
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.9e-42 175.3 230 43.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.5e-37 158.3 128 64.1
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.6e-34 150.6 120 62.5
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 3.3e-32 142.9 183 45.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.1e-31 138.7 100 68.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 8.0e-31 138.3 141 52.5
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.8e-30 135.2 111 62.2
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-29 134.4 81 79.0
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.6e-29 133.3 85 70.6
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 8.3e-28 128.3 89 67.4
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 6.0e-26 122.1 219 35.6
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-24 117.9 154 38.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.9e-24 117.1 106 59.4
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.6e-23 114.0 91 58.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.5e-21 107.5 100 59.0
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 2.9e-20 103.2 184 32.6
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.9e-20 102.4 71 67.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.2e-19 99.8 51 86.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.8e-18 95.1 54 81.5
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 8.6e-17 91.7 166 41.6
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.2e-14 82.4 53 69.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.7e-09 67.4 39 79.5
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-07 60.1 33 75.8


User provided reference genes

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