Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G069500 Prunus persica HOM05D001636 ORTHO05D003817 4.9e-34 147.1 69 100.0
Ah.15g093180 Amaranthus hybridus HOM05D001636 ORTHO05D003817 7.9e-08 60.1 33 84.8
Ah.08g213440 Amaranthus hybridus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
AagrBONN_evm.TU.Sc2ySwM_117.1376 Anthoceros agrestis HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
AagrBONN_evm.TU.Sc2ySwM_228.5320 Anthoceros agrestis HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
arahy.Tifrunner.gnm1.ann1.011XRQ Arachis hypogaea HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
arahy.Tifrunner.gnm1.ann1.B57D01 Arachis hypogaea HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
EL10Ac7g17470 Beta vulgaris HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
EL10Ac9g22177 Beta vulgaris HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
CSS0040607 Camellia sinensis var. sinensis HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Ca_17251_v3 Cicer arietinum L. HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
ClCG07G008500 Citrullus lanatus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
MELO3C016382.2 Cucumis melo HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
CsaV3_4G005660 Cucumis sativus L. HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Glyma.05G240800 Glycine max HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Glyma.20G204200 Glycine max HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Lj4g0004237 Lotus japonicus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Lj4g0026328 Lotus japonicus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Lalb_Chr05g0222071 Lupinus albus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Lalb_Chr09g0330771 Lupinus albus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Lalb_Chr16g0387431 Lupinus albus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
MD02G1152600 Malus domestica HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Manes.05G062000 Manihot esculenta HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Medtr5g097030 Medicago truncatula HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Medtr8g105890 Medicago truncatula HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Nn3g21491 Nelumbo nucifera HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Nn4g25788 Nelumbo nucifera HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Nitab4.5_0001879g0090 Nicotiana tabacum HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Phvul.002G324000 Phaseolus vulgaris HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Phvul.011G008300 Phaseolus vulgaris HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Psat4g004600 Pisum sativum HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Potri.002G204300 Populus trichocarpa HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Potri.014G129100 Populus trichocarpa HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Prupe.7G149600 Prunus persica HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Prupe.8G230200 Prunus persica HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
QL12p028476 Quercus lobata HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Rhsim01G0285100 Rhododendron simsii HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Rhsim13G0010100 Rhododendron simsii HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Sabra02G0154900 Salix brachista HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Sabra14G0095900 Salix brachista HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Sed0005968 Sechium edule HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Hund05428 Selenicereus undatus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
Hund18161 Selenicereus undatus HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
vmacro02450 Vaccinium macrocarpon HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
vmacro15012 Vaccinium macrocarpon HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
VMungo0251G2599 Vigna mungo HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
VMungo1127G0954 Vigna mungo HOM05D001636 ORTHO05D003817 3.0e-07 58.2 33 81.8
MD06G1058300 Malus domestica HOM05D001636 ORTHO05D003817 3.9e-07 57.8 33 78.8
RcHm_v2.0_Chr2g0102251 Rosa chinensis HOM05D001636 ORTHO05D003817 3.9e-07 57.8 33 78.8
Solyc09g075130.3 Solanum lycopersicum HOM05D001636 ORTHO05D003817 5.1e-07 57.4 33 81.8
Sopen09g029950 Solanum pennellii HOM05D001636 ORTHO05D003817 5.1e-07 57.4 33 81.8
PGSC0003DMG400011403 Solanum tuberosum HOM05D001636 ORTHO05D003817 5.1e-07 57.4 33 81.8
CANSAT35G0165 Cannabis sativa HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
FvH4_5g18870 Fragaria vesca HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
FAN04G2283 Fragaria x ananassa HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
FAN08G0307 Fragaria x ananassa HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
FAN13G2125 Fragaria x ananassa HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
FAN18G3048 Fragaria x ananassa HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
FAN18G3940 Fragaria x ananassa HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
Glyma.10G186300 Glycine max HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
MD15G1267000 Malus domestica HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
RcHm_v2.0_Chr7g0203251 Rosa chinensis HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
Sed0009058 Sechium edule HOM05D001636 ORTHO05D003817 6.7e-07 57.0 33 78.8
AUR62008674 Chenopodium quinoa HOM05D001636 ORTHO05D003817 8.7e-07 56.6 33 78.8
AUR62018541 Chenopodium quinoa HOM05D001636 ORTHO05D003817 8.7e-07 56.6 33 78.8
AUR62025572 Chenopodium quinoa HOM05D001636 ORTHO05D003817 8.7e-07 56.6 33 78.8
FvH4_1g13940 Fragaria vesca HOM05D001636 ORTHO05D003817 8.7e-07 56.6 33 75.8
FAN19G3169 Fragaria x ananassa HOM05D001636 ORTHO05D003817 8.7e-07 56.6 33 75.8
Nitab4.5_0002640g0010 Nicotiana tabacum HOM05D001636 ORTHO05D003817 8.7e-07 56.6 33 78.8
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 8.7e-07 56.6 33 78.8
ATR0706G006 Amborella trichopoda HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
CSS0016701 Camellia sinensis var. sinensis HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
CiPaw.08G095300 Carya illinoinensis HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
CDE02G3049 Ceratophyllum demersum HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
CDE02G4544 Ceratophyllum demersum HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
CDE09G0699 Ceratophyllum demersum HOM05D002720 ORTHO05D002901 1.1e-06 56.2 33 78.8
Haze_04938 Corylus avellana HOM05D000286 ORTHO05D003817 1.1e-06 56.2 33 78.8
Haze_10849 Corylus avellana HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Dinv00921 Davidia involucrata HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Eucgr.H01111 Eucalyptus grandis HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Hma1.2p1_0494F.1_g165180 Hydrangea macrophylla HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Hma1.2p1_1471F.1_g285650 Hydrangea macrophylla HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Hma1.2p1_1471F.1_g285655 Hydrangea macrophylla HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Manes.15G136700 Manihot esculenta HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Manes.17G085700 Manihot esculenta HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
QL03p037965 Quercus lobata HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
TAR362G1299 Trochodendron aralioides HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
TAR365G0771 Trochodendron aralioides HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
GSVIVG01011627001 Vitis vinifera HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
GSVIVG01028015001 Vitis vinifera HOM05D001636 ORTHO05D003817 1.1e-06 56.2 33 78.8
Atru.chr11.834 Acer truncatum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Atru.chr5.1147 Acer truncatum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Actinidia24823 Actinidia chinensis HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Aqoxy2G04061 Aquilegia oxysepala HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
MSTRG.18149 Avicennia marina HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
CAN.G472.4 Capsicum annuum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Cpa.g.sc9.261 Carica papaya HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Cc11_g06600 Coffea canephora HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.9e-06 55.5 33 78.8
Duzib248G0729 Durio zibethinus HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Duzib251G0676 Durio zibethinus HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
ECA236G0463 Erigeron canadensis HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Migut.B01153 Erythranthe guttata HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Migut.D00220 Erythranthe guttata HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Migut.O00746 Erythranthe guttata HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Gohir.A05G307866 Gossypium hirsutum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Gohir.A13G027700 Gossypium hirsutum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Gohir.D13G026500 Gossypium hirsutum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Gorai.009G328400 Gossypium raimondii HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
HanXRQChr03g0075541 Helianthus annuus HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
HanXRQChr04g0114501 Helianthus annuus HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
HanXRQChr06g0163781 Helianthus annuus HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Lsat_1_v5_gn_4_184221 Lactuca sativa HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Mapoly0037s0122 Marchantia polymorpha HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 75.8
Oeu046678.1 Olea europaea HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Os01g0967000 Oryza sativa ssp. japonica HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Os05g0314100 Oryza sativa ssp. japonica HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
PSO170G3858 Papaver somniferum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
PSO407G0057 Papaver somniferum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
PSO675G8449 Papaver somniferum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Pp3c10_17640 Physcomitrium patens HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 75.8
Pp3c3_26020 Physcomitrium patens HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 75.8
PGR042G3902 Punica granatum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
PGR142G0436 Punica granatum HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
SalBow1G5633 Salvia bowleyana HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
SalBow3G4558 Salvia bowleyana HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
SGA_v2.0_scaffold198G41149 Striga asiatica HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
SGA_v2.0_scaffold2G01391 Striga asiatica HOM05D000286 ORTHO05D000170 1.9e-06 55.5 33 78.8
Thecc.02G307800 Theobroma cacao HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
TWI14G1361 Tripterygium wilfordii HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
TWI23G0966 Tripterygium wilfordii HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
TWI59G1425 Tripterygium wilfordii HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Zm00001eb077210 Zea mays HOM05D001636 ORTHO05D003817 1.9e-06 55.5 33 78.8
Aqoxy5G00757 Aquilegia oxysepala HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 75.8
AL4G47220 Arabidopsis lyrata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
AL5G45620 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 2.5e-06 55.1 33 78.8
AT2G47640 Arabidopsis thaliana HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
AT3G62840 Arabidopsis thaliana HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaB02g07316 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaB02g08095 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaC02g10316 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaC07g40754 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaC07g40757 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaC07g42737 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BcaC08g45241 Brassica carinata HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
A09p54690 Brassica napus HOM05D001675 ORTHO05D000170 2.5e-06 55.1 33 78.8
C04p30400 Brassica napus HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
C08p37590 Brassica napus HOM05D001550 ORTHO05D001611 2.5e-06 55.1 33 78.8
BolC4t24574H Brassica oleracea HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BolC8t51339H Brassica oleracea HOM05D000286 ORTHO05D000170 2.5e-06 55.1 33 78.8
BraA04t15770Z Brassica rapa HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
BraA09t40880Z Brassica rapa HOM05D001675 ORTHO05D000170 2.5e-06 55.1 33 78.8
Carub.0004s3037 Capsella rubella HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
CARHR143040 Cardamine hirsuta HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
CARHR173110 Cardamine hirsuta HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
Thhalv10001688m.g Eutrema salsugineum HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
Thhalv10006266m.g Eutrema salsugineum HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
MBI19_g25358_MAGBIO Magnolia biondii HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 75.8
Sp4g29580 Schrenkiella parvula HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
Sp5g00670 Schrenkiella parvula HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
THA.LOC104802174 Tarenaya hassleriana HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
THA.LOC104817495 Tarenaya hassleriana HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 78.8
Zm00001eb426700 Zea mays HOM05D001636 ORTHO05D003817 2.5e-06 55.1 33 75.8
Aa31LG10G16540 Aethionema arabicum HOM05D001636 ORTHO05D003817 3.3e-06 54.7 33 75.8
Aa31LG1G28980 Aethionema arabicum HOM05D001636 ORTHO05D003817 3.3e-06 54.7 33 75.8
Peaxi162Scf00001g00434 Petunia axillaris HOM05D001636 ORTHO05D003817 3.3e-06 54.7 33 75.8
Ciclev10017261m.g Citrus clementina HOM05D001636 ORTHO05D003817 4.3e-06 54.3 33 75.8
Ciclev10022968m.g Citrus clementina HOM05D001636 ORTHO05D003817 4.3e-06 54.3 33 75.8
Cc01_g20840 Coffea canephora HOM05D001636 ORTHO05D003817 4.3e-06 54.3 33 75.8
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 4.3e-06 54.3 33 75.8
unitig_26.g10172 Utricularia gibba HOM05D001636 ORTHO05D003817 4.3e-06 54.3 33 75.8
Cpa.g.sc2.167 Carica papaya HOM05D001636 ORTHO05D003817 5.6e-06 53.9 33 75.8
CDE08G0313 Ceratophyllum demersum HOM05D001636 ORTHO05D003817 5.6e-06 53.9 33 75.8
FAN23G1648 Fragaria x ananassa HOM05D001636 ORTHO05D003817 5.6e-06 53.9 33 69.7
Pp3c12_17690 Physcomitrium patens HOM05D001636 ORTHO05D003817 7.4e-06 53.5 33 72.7
Carub.0005s2950 Capsella rubella HOM05D001636 ORTHO05D003817 9.6e-06 53.1 33 75.8
CBR_g44940 Chara braunii HOM05D001636 ORTHO05D003817 9.6e-06 53.1 33 69.7
HPP92_011491 Vanilla planifolia HOM05D001636 ORTHO05D003817 9.6e-06 53.1 33 72.7


User provided reference genes

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