Gene: AT2G47640
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G47640
- Transcript Identifier AT2G47640.3
- Gene Type Coding gene
- Location Chr2 : 19537393-19538431 : positive
Gene Family Information
- ID HOM05D001636
- #Genes/#Species 394/94
- Phylogenetic origin
- ID ORTHO05D003817
- #Genes/#Species 204/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G47640.3
- uniprot O22247
Descriptions
- Description Small nuclear ribonucleoprotein family protein
- Computational description Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
- Computational description Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0008380 | IEA | InterPro | RNA splicing | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0000387 | IBA | Gene Ontology | spliceosomal snRNP assembly | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005682 | IBA | Gene Ontology | U5 snRNP | 1 |
| GO:0030532 | IEA | GOA Database | small nuclear ribonucleoprotein complex | |
| GO:0030532 | IEA | InterPro | small nuclear ribonucleoprotein complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0071011 | IBA | Gene Ontology | precatalytic spliceosome | 1 |
| GO:0046540 | IBA | Gene Ontology | U4/U6 x U5 tri-snRNP complex | 1 |
| GO:0071013 | IBA | Gene Ontology | catalytic step 2 spliceosome | 1 |
| GO:0005685 | IBA | Gene Ontology | U1 snRNP | 1 |
| GO:0005686 | IBA | Gene Ontology | U2 snRNP | 1 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 2 |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.2.3 | RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D2 |