Gene: AT3G62840
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G62840
- Transcript Identifier AT3G62840.1
- Gene Type Coding gene
- Location Chr3 : 23235727-23236615 : negative
Gene Family Information
- ID HOM05D001636
- #Genes/#Species 394/94
- Phylogenetic origin
- ID ORTHO05D003817
- #Genes/#Species 204/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G62840.1
- uniprot Q8L3W7
Descriptions
- Description Small nuclear ribonucleoprotein family protein
- Computational description Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G47640.4); Has 794 Blast hits to 794 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 330; Fungi - 182; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0008380 | IEA | InterPro | RNA splicing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0030532 | IEA | Gene Ontology | small nuclear ribonucleoprotein complex | |
| GO:0030532 | IEA | InterPro | small nuclear ribonucleoprotein complex | |
| GO:0005829 | HDA RCA | Gene Ontology | cytosol | 1 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.2.3 | RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D2 |