Gene: Pp3c3_26020

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c3_26020
  • Transcript Identifier Pp3c3_26020V3.1
  • Gene Type Coding gene
  • Location Chr03 : 17799569-17800867 : positive

Gene Family Information

  • ID HOM05D001636
  • #Genes/#Species 394/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c3_26020V3.1
  • pacid 32940239
  • alias Pp1s288_45V6
  • alias Phypa_149032
  • alias Phpat.003G102700
  • uniprot A0A2K1KW08

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IEA
InterProRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000387
IBA
GOA Databasespliceosomal snRNP assembly

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030532
IEA
GOA Databasesmall nuclear ribonucleoprotein complex
GO:0030532
IEA
InterProsmall nuclear ribonucleoprotein complex
GO:0005634
IEA
GOA Databasenucleus
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005682
IBA
GOA DatabaseU5 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR027248 Small nuclear ribonucleoprotein Sm D2
IPR010920 LSM domain superfamily
Mapman id Description
16.2.2.3 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D2