Gene: COL.COLO4_27613

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_27613
  • Transcript Identifier COL.rna26338
  • Gene Type Coding gene
  • Location AWUE01019644.1 : 52989-58792 : positive

Gene Family Information

  • ID HOM05D005650
  • #Genes/#Species 137/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna26338
  • GenBank OMO72462.1
  • id gene27585
  • gene_name COLO4_27613
  • uniprot A0A1R3HQA5

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IEA
InterProRNA splicing
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16020

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0035658
IEA
GOA DatabaseMon1-Ccz1 complex
GO:0035658
IEA
InterProMon1-Ccz1 complex
GO:0030532
IEA
GOA Databasesmall nuclear ribonucleoprotein complex
GO:0030532
IEA
InterProsmall nuclear ribonucleoprotein complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
IPR027248 Small nuclear ribonucleoprotein Sm D2
IPR013176 Vacuolar fusion protein Ccz1
Mapman id Description
16.2.2.3 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D2
22.3.4.5.5.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.MON1-CCZ1 RAB7 nucleotide exchange factor complex.component CCZ1