Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.3e-275 952.6 526 100.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.0e-236 822.4 435 89.4
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.1e-233 812.4 436 89.4
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.8e-233 810.4 437 89.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.7e-232 807.0 438 88.8
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 4.8e-230 801.2 535 86.2
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 8.1e-230 800.4 449 86.4
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 9.0e-229 797.0 430 87.7
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.2e-228 796.6 426 89.9
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 4.9e-227 791.2 451 85.1
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.9e-226 789.3 451 84.9
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.9e-226 789.3 422 86.7
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 3.5e-225 785.0 422 87.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 6.0e-225 784.3 444 84.9
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 7.8e-225 783.9 422 87.0
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 5.1e-224 781.2 425 86.1
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 6.6e-224 780.8 458 81.4
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 8.7e-224 780.4 461 82.9
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.5e-223 779.6 447 83.2
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 7.3e-223 777.3 419 87.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 7.3e-223 777.3 424 87.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.8e-222 775.4 432 85.2
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 6.2e-222 774.2 443 83.3
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 2.4e-221 772.3 422 86.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 5.3e-221 771.2 444 83.1
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 9.0e-221 770.4 449 82.6
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-220 770.0 445 83.4
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 3.4e-220 768.5 423 85.6
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.5e-220 768.1 451 81.4
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.5e-220 768.1 451 81.4
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 7.6e-220 767.3 448 82.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 9.9e-220 766.9 422 86.0
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.3e-219 766.5 430 85.6
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 2.9e-219 765.4 444 83.6
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 4.9e-219 764.6 447 82.1
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 4.9e-219 764.6 431 84.7
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 6.4e-219 764.2 424 84.2
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 6.4e-219 764.2 447 82.1
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.6e-217 759.6 446 81.4
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 3.0e-216 755.4 428 83.6
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 6.7e-216 754.2 437 82.8
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 8.7e-216 753.8 420 85.0
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 1.9e-215 752.7 420 85.0
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 9.6e-215 750.4 441 81.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.6e-214 749.6 442 80.8
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 3.7e-214 748.4 421 84.1
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.8e-214 748.0 451 82.3
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 8.1e-214 747.3 431 83.5
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.1e-213 745.3 422 83.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 5.3e-213 744.6 421 83.6
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 6.9e-213 744.2 428 82.9
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.5e-212 743.0 479 76.8
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.5e-212 743.0 431 84.0
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 4.5e-212 741.5 429 84.4
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.0e-208 730.3 424 83.7
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 6.7e-208 727.6 448 78.8
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.7e-208 727.6 423 81.3
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 2.1e-206 722.6 414 83.3
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 6.2e-206 721.1 423 81.8
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 9.0e-205 717.2 488 73.4
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.4e-202 709.9 417 80.8
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.9e-202 709.5 426 81.2
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 9.3e-202 707.2 420 81.2
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.0e-200 703.7 422 80.1
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 8.7e-200 700.7 425 80.0
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.5e-199 699.1 398 85.7
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 5.7e-199 698.0 439 78.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 9.7e-199 697.2 439 78.1
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.8e-198 694.9 452 75.9
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 3.4e-196 688.7 480 71.2
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.5e-196 688.3 437 76.7
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.0e-195 687.2 433 77.1
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.9e-194 682.9 442 74.0
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.8e-192 674.1 350 91.1
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 4.8e-190 668.3 457 71.1
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 3.1e-189 665.6 455 71.2
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 2.6e-188 662.5 425 76.7
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 5.0e-187 658.3 448 71.2
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 8.5e-187 657.5 452 71.0
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-186 657.1 424 74.8
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.5e-186 656.0 454 70.7
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-185 652.1 420 74.3
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.0e-184 650.6 439 71.5
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.0e-184 650.6 423 74.2
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.0e-184 650.6 392 79.8
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.3e-184 649.4 424 73.3
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 3.0e-184 649.0 427 73.5
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.1e-183 647.1 437 72.5
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 7.4e-183 644.4 437 72.3
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.3e-182 643.7 425 72.9
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.3e-182 643.7 425 74.4
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.4e-181 639.4 423 72.3
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 7.7e-180 634.4 377 79.8
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.9e-178 629.8 453 69.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 9.4e-178 627.5 457 68.7
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-177 625.5 429 71.3
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.4e-176 623.6 422 70.9
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.5e-175 620.2 428 72.4
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.3e-175 619.0 396 75.8
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.4e-175 617.8 424 70.5
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 3.7e-174 615.5 393 75.1
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 2.5e-170 602.8 390 75.9
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 4.2e-170 602.1 387 76.7
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.6e-169 600.1 467 66.6
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.1e-169 598.2 452 65.9
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.1e-165 587.4 315 88.9
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.1e-162 577.4 345 79.1
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 8.8e-160 567.8 305 85.6
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.8e-157 560.1 322 81.7
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 6.8e-144 515.0 338 72.8
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 6.2e-137 491.9 292 80.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 6.8e-136 488.4 311 77.5
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.1e-133 478.4 446 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.5e-127 460.7 424 55.2
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 3.0e-123 446.4 477 50.9
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.1e-123 445.7 354 64.4
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 3.8e-118 429.5 370 57.6
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.1e-117 427.9 328 64.6
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.6e-108 397.5 325 56.3
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.7e-108 396.7 218 83.0
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 7.6e-103 378.6 191 91.6
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.2e-92 344.7 427 47.1
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.5e-90 337.8 258 67.4
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.5e-90 337.8 229 72.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.5e-66 258.1 262 54.6
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-60 237.7 211 60.7
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 4.7e-52 209.9 114 86.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.7e-50 203.0 136 75.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.5e-45 186.4 170 62.9
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.3e-41 175.3 117 73.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.1e-36 157.9 289 35.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.2e-31 142.1 78 85.9
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 5.9e-31 139.8 77 81.8
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 3.3e-29 134.0 269 34.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.5e-21 107.8 80 66.2
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 2.3e-19 101.3 211 33.6
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 9.2e-16 89.4 52 76.9
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 5.2e-11 73.6 88 52.3
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.9e-09 67.8 29 93.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 2.1e-07 61.6 28 92.9
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 1.3e-06 58.9 51 54.9


User provided reference genes

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