Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.1e-127 459.9 231 100.0
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 2.0e-103 379.4 231 82.3
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.4e-96 356.7 231 78.8
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 4.8e-94 348.2 231 77.1
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 8.5e-91 337.4 231 75.8
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-90 336.7 231 74.9
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.5e-90 335.9 231 74.5
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 8.0e-89 330.9 233 74.7
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.2e-87 327.0 237 70.5
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.2e-86 322.8 231 70.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.8e-86 322.4 233 71.2
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 3.1e-85 318.9 231 68.8
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 7.0e-85 317.8 231 69.3
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.6e-84 316.6 237 69.2
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.6e-84 316.6 237 69.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.7e-84 315.8 205 77.6
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 3.5e-84 315.5 231 68.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.9e-84 314.7 231 67.5
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.3e-83 313.5 231 66.7
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.3e-83 313.5 237 67.9
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.7e-83 313.2 231 68.4
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.5e-82 308.1 231 66.2
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 5.5e-82 308.1 231 66.7
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.2e-82 307.8 231 66.2
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 9.5e-82 307.4 232 69.4
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 4.7e-81 305.1 207 73.9
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.1e-81 304.7 231 65.8
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 8.0e-81 304.3 231 67.1
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.0e-80 303.9 236 66.9
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.3e-80 302.8 231 67.1
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 8.9e-80 300.8 236 66.5
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 5.7e-79 298.1 232 67.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.3e-78 297.0 232 65.9
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.3e-78 297.0 232 68.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.8e-78 295.8 231 67.1
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 4.9e-78 295.0 231 64.9
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 4.9e-78 295.0 232 64.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.4e-77 293.5 231 65.4
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.1e-77 292.4 232 65.1
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.1e-77 292.4 232 65.1
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 9.2e-77 290.8 233 63.5
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.6e-76 290.0 233 63.5
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 5.9e-76 288.1 231 64.9
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.0e-75 287.3 231 64.5
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 5.0e-75 285.0 232 64.7
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 8.6e-75 284.3 233 62.7
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.9e-74 283.1 239 63.6
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.6e-73 280.0 232 63.8
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-73 280.0 233 62.2
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.4e-72 276.9 237 62.0
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.4e-72 276.9 231 64.5
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.3e-72 276.2 233 61.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.5e-71 273.5 232 61.6
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.5e-71 273.5 232 62.5
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.5e-71 273.5 231 60.6
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 2.6e-71 272.7 235 63.0
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.4e-71 271.9 232 61.2
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 9.8e-71 270.8 231 60.6
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 4.9e-70 268.5 237 61.2
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 6.4e-70 268.1 231 58.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.1e-69 265.4 232 59.9
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 4.1e-69 265.4 233 59.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 7.0e-69 264.6 225 61.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 7.0e-69 264.6 240 60.0
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 3.5e-68 262.3 231 59.7
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 4.6e-68 261.9 240 60.8
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 6.0e-68 261.5 243 58.4
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.3e-67 260.4 241 58.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.7e-67 260.0 235 59.6
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 3.0e-67 259.2 240 59.6
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.0e-67 259.2 241 58.1
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.1e-66 257.3 240 60.0
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 4.3e-66 255.4 241 57.7
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 7.3e-66 254.6 237 59.1
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.2e-65 253.8 241 57.7
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 6.2e-65 251.5 241 57.3
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 6.2e-65 251.5 274 52.9
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-64 250.8 214 60.7
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.1e-64 250.8 213 62.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.8e-64 250.0 211 64.0
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 5.2e-64 248.4 210 61.0
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.6e-63 246.1 188 64.4
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 5.8e-63 245.0 268 52.6
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 6.4e-62 241.5 213 62.0
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 6.4e-62 241.5 233 56.7
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.1e-61 240.7 231 56.3
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.4e-61 239.6 207 58.9
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 6.0e-60 235.0 187 66.3
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 7.3e-58 228.0 161 69.6
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.4e-56 223.8 231 54.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.8e-56 223.4 179 66.5
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.1e-56 222.6 232 55.2
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 5.2e-56 221.9 233 53.2
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 6.8e-56 221.5 267 49.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 1.2e-55 220.7 219 56.2
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.7e-54 215.7 232 55.2
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.7e-54 215.7 232 53.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.9e-54 215.3 232 52.6
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.4e-53 213.8 226 55.3
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.4e-53 213.0 179 62.6
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 9.2e-53 211.1 208 56.7
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.2e-52 210.7 200 56.0
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 9.5e-50 201.1 122 78.7
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 5.2e-48 195.3 210 52.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.1e-45 187.6 223 49.8
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 3.2e-45 186.0 255 47.1
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.4e-45 185.3 227 47.1
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 7.1e-45 184.9 122 69.7
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.3e-43 180.6 187 55.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-43 180.3 96 83.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.7e-43 180.3 216 48.1
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 2.3e-43 179.9 233 46.4
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.2e-41 174.1 179 54.7
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 8.1e-41 171.4 173 57.2
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 6.9e-40 168.3 253 43.1
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.4e-37 160.6 192 49.5
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.6e-36 157.1 203 49.3
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 4.2e-29 132.5 92 69.6
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 6.7e-27 125.2 178 44.4
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 3.7e-25 119.4 70 81.4
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.4e-21 107.5 57 84.2
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 3.2e-21 106.3 132 48.5
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 9.3e-21 104.8 67 64.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.9e-19 99.4 69 68.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 9.0e-16 88.2 71 63.4
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.0e-15 87.0 49 81.6
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 7.6e-15 85.1 64 68.8
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 6.5e-14 82.0 50 66.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 4.2e-13 79.3 58 67.2
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.0e-11 74.7 108 41.7
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-11 73.9 70 55.7
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-11 73.6 103 44.7
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.9e-11 72.8 48 70.8
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.1e-11 72.4 48 70.8
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-10 71.2 48 68.8
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.1e-10 71.2 48 66.7
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.3e-09 65.5 43 67.4
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-08 64.3 43 67.4
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 4.5e-07 59.3 29 89.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.3e-06 57.8 42 59.5


User provided reference genes

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