Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1647.9 810 100.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1550.0 810 93.5
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1531.9 810 92.6
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1516.9 811 90.8
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1513.4 810 91.0
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1507.3 815 90.1
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1492.2 815 89.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1492.2 815 89.4
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1454.1 810 86.7
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1438.3 811 86.9
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1422.9 815 84.8
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1422.5 808 85.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1416.0 811 84.3
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1412.1 810 84.6
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1407.1 811 84.2
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1405.6 811 83.5
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1405.2 814 83.4
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1403.7 809 84.2
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1397.9 807 83.8
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1392.5 814 83.5
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1392.1 814 83.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1391.3 814 83.4
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1383.6 809 82.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1382.1 810 83.1
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1380.9 809 82.4
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1380.9 811 83.0
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1377.1 818 82.2
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 807 83.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1372.8 813 82.4
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1371.7 816 82.4
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1370.9 809 83.3
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1369.8 813 82.5
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1369.4 816 80.6
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1368.6 817 81.4
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1368.6 809 81.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1367.8 805 82.5
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1366.3 809 81.5
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1364.4 804 82.2
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1363.6 810 82.3
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1363.6 816 80.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1362.4 812 81.3
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1361.3 807 81.7
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1354.0 890 75.4
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1352.8 810 80.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1352.0 808 80.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1342.0 810 79.9
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1341.3 832 80.2
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1340.5 810 80.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1339.3 812 80.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1338.6 810 80.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1323.5 808 80.2
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1320.8 812 79.1
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1320.1 807 79.3
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 820 78.3
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1308.9 796 78.9
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1301.2 806 78.2
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 805 78.9
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 805 78.6
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 806 78.4
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 806 77.3
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 807 77.7
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1291.9 806 77.2
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1291.6 807 77.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 808 77.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 806 77.4
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 806 77.4
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1288.9 806 77.3
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 807 77.8
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1286.2 807 77.3
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1285.8 807 77.3
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1284.6 814 76.7
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 806 76.6
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 808 76.7
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 806 76.9
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1273.1 807 76.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 785 79.0
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 807 76.5
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 807 75.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1263.4 807 76.1
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 818 75.2
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 862 72.0
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 812 75.4
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 812 76.1
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 810 75.3
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 801 75.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 808 74.3
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1242.6 816 74.1
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1240.3 814 74.6
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 860 71.0
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 807 74.5
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1234.2 809 73.9
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1229.9 813 76.4
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1226.8 811 74.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1223.4 810 73.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1217.6 807 72.0
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1217.2 967 65.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 869 69.2
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 812 74.6
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 765 77.0
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 808 74.0
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1194.9 812 71.3
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 912 66.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 781 74.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 810 70.6
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 822 71.8
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1180.6 808 71.2
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 963 63.3
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1151.7 807 71.1
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1124.4 814 67.0
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1108.6 812 71.2
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 820 65.2
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1094.3 808 68.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.8e-295 1018.1 605 81.0
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.1e-294 1016.5 800 61.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 9.7e-283 976.9 805 61.5
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.2e-250 869.4 779 60.2
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 5.5e-193 678.7 381 84.8
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.5e-190 669.8 863 44.4
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.5e-169 599.0 831 42.4
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 4.7e-160 569.3 808 43.6
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 2.2e-149 533.9 940 35.4
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.1e-148 529.6 857 38.9
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 3.5e-123 446.8 418 55.5
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.3e-122 444.1 320 69.1
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.3e-114 418.3 345 65.8
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.9e-113 414.5 248 77.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 5.3e-87 326.6 237 70.5
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.8e-74 285.0 196 73.0
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.6e-67 261.9 173 74.0
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 5.3e-63 246.9 679 30.8
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.8e-48 197.2 191 58.6
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.3e-48 196.8 141 72.3
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 8.8e-42 176.4 103 81.6
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 8.3e-40 169.9 90 82.2
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.5e-36 159.1 270 41.5
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 2.8e-35 154.8 97 71.1
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 8.0e-35 153.3 108 67.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.0e-33 148.7 121 66.1
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 2.4e-31 141.7 118 61.9
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 3.1e-31 141.4 182 48.4
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.9e-30 137.1 94 71.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 5.6e-28 130.6 190 42.1
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.4e-26 125.9 80 76.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 6.8e-26 123.6 113 52.2
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 4.4e-25 120.9 172 43.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.2e-22 112.8 261 32.2
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.3e-21 108.6 68 79.4
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.3e-21 108.6 109 54.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 4.0e-18 97.8 63 79.4
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 4.0e-18 97.8 59 79.7
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 8.9e-18 96.7 73 63.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 2.6e-17 95.1 156 45.5
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 7.5e-17 93.6 50 80.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-15 89.7 42 92.9
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 3.9e-13 81.3 51 80.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.8e-11 75.1 129 38.0
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.8e-10 72.4 59 52.5
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.4e-09 68.2 57 64.9
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 4.4e-09 67.8 69 58.0
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.8e-09 67.4 57 64.9
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.8e-09 67.4 57 64.9
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 7.5e-09 67.0 438 21.5
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.2e-08 65.5 57 61.4
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-08 65.1 54 66.7
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 4.9e-08 64.3 56 64.3
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 6.4e-08 63.9 466 22.3
CBR_g21302 Chara braunii HOM05D002714 ORTHO05D020415 8.3e-08 63.5 585 22.7
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.3e-08 63.5 54 64.8
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.3e-08 63.5 54 64.8
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.3e-08 63.5 54 64.8
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.4e-07 62.8 34 88.2


User provided reference genes

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