Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 3.4e-228 794.7 401 100.0
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 1.4e-181 639.8 407 81.8
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 3.7e-150 535.4 402 71.9
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 2.4e-141 506.1 349 73.6
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 5.4e-141 505.0 352 73.6
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.2e-135 487.3 348 71.0
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 1.2e-135 487.3 348 71.0
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 3.7e-134 482.3 365 68.8
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.9e-134 481.9 504 56.5
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 4.9e-134 481.9 355 70.1
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 6.4e-134 481.5 343 70.8
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 6.4e-134 481.5 394 64.5
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 1.1e-133 480.7 348 69.8
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 4.1e-133 478.8 403 63.8
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.1e-133 478.8 351 71.5
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 5.4e-133 478.4 415 63.4
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 2.0e-132 476.5 503 56.9
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 2.0e-132 476.5 345 70.1
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 7.8e-132 474.6 504 56.2
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.0e-131 474.2 504 56.2
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 8.6e-131 471.1 352 71.3
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 1.1e-130 470.7 365 65.8
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 4.3e-130 468.8 386 65.3
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 1.6e-129 466.8 343 70.3
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 1.6e-129 466.8 357 68.3
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 2.1e-129 466.5 402 61.7
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 3.6e-129 465.7 347 67.4
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 4.7e-129 465.3 350 69.1
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 4.7e-129 465.3 349 69.3
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 6.2e-129 464.9 349 68.8
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 1.0e-128 464.2 442 58.1
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 2.3e-128 463.0 351 67.5
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 5.2e-128 461.8 395 63.5
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 5.2e-128 461.8 348 70.4
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 8.9e-128 461.1 347 68.0
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 5.8e-127 458.4 354 68.1
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 2.9e-126 456.1 344 67.2
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 3.7e-126 455.7 376 63.6
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 6.4e-126 454.9 372 65.1
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 3.5e-124 449.1 361 64.3
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 7.8e-124 448.0 376 62.0
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 1.0e-123 447.6 395 61.3
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.7e-123 446.8 386 61.9
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 2.3e-123 446.4 361 63.7
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 2.3e-123 446.4 361 63.7
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 5.0e-123 445.3 351 65.2
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 6.6e-123 444.9 423 59.8
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 1.1e-122 444.1 361 64.3
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 2.5e-122 443.0 358 64.8
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 3.3e-122 442.6 372 62.9
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 4.3e-122 442.2 429 59.0
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 4.3e-122 442.2 356 63.5
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 2.1e-121 439.9 356 64.0
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 2.8e-121 439.5 352 64.8
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 2.8e-121 439.5 362 64.1
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 3.6e-121 439.1 345 65.5
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 6.2e-121 438.3 361 63.2
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 8.1e-121 438.0 345 65.8
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 1.1e-120 437.6 408 59.1
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.4e-120 437.2 345 65.5
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.4e-120 437.2 356 63.2
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 2.3e-120 436.4 367 62.7
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 3.1e-120 436.0 350 65.4
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 1.5e-119 433.7 360 62.5
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 1.5e-119 433.7 346 63.6
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 2.6e-119 433.0 361 63.4
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 4.4e-119 432.2 374 60.2
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 1.7e-118 430.3 360 61.1
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 3.7e-118 429.1 355 62.3
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 3.7e-118 429.1 355 62.3
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 8.3e-118 427.9 366 60.7
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 1.1e-117 427.6 347 62.8
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.1e-117 427.6 371 61.5
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 1.4e-117 427.2 346 62.7
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.1e-117 425.6 457 53.0
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 2.1e-116 423.3 356 61.2
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 1.3e-115 420.6 347 60.5
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 3.0e-115 419.5 351 63.2
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 5.1e-115 418.7 368 60.1
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 1.5e-114 417.2 356 60.7
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.9e-114 416.8 369 60.2
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 2.5e-114 416.4 347 62.2
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 3.6e-113 412.5 345 61.7
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 3.1e-112 409.5 354 62.1
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 8.9e-112 407.9 432 53.2
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 3.4e-111 406.0 373 59.0
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 1.7e-110 403.7 348 61.2
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.9e-109 400.2 323 65.3
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.6e-105 387.1 371 57.1
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 8.1e-105 384.8 423 53.4
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 3.8e-102 375.9 238 75.6
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 4.9e-102 375.6 321 62.9
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 4.9e-102 375.6 216 82.9
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.3e-98 362.5 413 50.6
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 1.8e-96 357.1 391 52.7
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 3.6e-89 332.8 320 55.6
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 3.1e-88 329.7 308 59.7
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 5.3e-88 328.9 205 77.1
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.6e-81 307.4 321 51.7
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.1e-77 294.7 365 46.3
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 2.1e-76 290.4 205 70.7
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 2.5e-74 283.5 171 76.0
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 1.3e-73 281.2 145 89.0
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 3.7e-73 279.6 305 54.1
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 8.2e-73 278.5 347 45.5
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 2.7e-68 263.5 357 43.7
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 1.9e-66 257.3 345 43.5
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 3.3e-66 256.5 149 80.5
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 3.7e-65 253.1 192 63.5
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 8.5e-62 241.9 140 81.4
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 1.0e-59 235.0 309 44.0
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 2.6e-50 203.8 205 55.6
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 3.7e-49 199.9 232 52.2
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 1.4e-48 198.0 118 78.8
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 8.5e-46 188.7 348 35.6
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.0e-39 167.5 199 49.7
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 9.1e-32 142.1 131 58.8
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 7.7e-31 139.0 93 74.2
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 4.2e-29 133.3 191 39.3
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 1.0e-27 128.6 194 37.1
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 2.0e-26 124.4 136 52.9
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 2.4e-24 117.5 137 57.7
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 3.5e-23 113.6 92 62.0
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.8e-22 110.2 62 82.3
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 4.3e-21 106.7 65 76.9
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.0e-19 102.1 89 60.7
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 1.4e-19 101.7 112 50.9
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 3.0e-19 100.5 169 34.9
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 1.2e-18 98.6 115 50.4
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 1.5e-18 98.2 109 51.4
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 3.4e-18 97.1 210 35.2
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 7.5e-18 95.9 140 43.6
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 4.9e-17 93.2 88 58.0
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 1.4e-16 91.7 168 41.7
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 7.8e-15 85.9 92 54.3
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 1.3e-14 85.1 88 54.5
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 6.6e-14 82.8 119 42.0
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 1.1e-13 82.0 82 52.4
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 2.5e-13 80.9 44 84.1
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 5.6e-13 79.7 183 38.3
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 2.1e-12 77.8 208 29.8
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 4.7e-12 76.6 38 92.1
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 4.7e-12 76.6 47 68.1
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 4.7e-12 76.6 49 75.5
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.8e-11 74.7 103 46.6
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 3.7e-09 67.0 41 73.2
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 1.6e-07 61.6 79 41.8
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 2.7e-07 60.8 32 81.2
Lj2g0018286 Lotus japonicus HOM05D001448 ORTHO05D005781 6.0e-07 59.7 83 36.1
Cc01_g18530 Coffea canephora HOM05D001448 ORTHO05D005781 1.0e-06 58.9 109 41.3
THA.LOC104800882 Tarenaya hassleriana HOM05D001448 ORTHO05D005781 1.0e-06 58.9 107 37.4
CARHR124940 Cardamine hirsuta HOM05D001448 ORTHO05D005781 1.3e-06 58.5 78 38.5
BcaB02g10384 Brassica carinata HOM05D001448 ORTHO05D005781 1.7e-06 58.2 94 38.3
CDE09G1103 Ceratophyllum demersum HOM05D001448 ORTHO05D005781 3.0e-06 57.4 104 37.5
Cfa002395 Carpinus fangiana HOM05D001448 ORTHO05D005781 3.9e-06 57.0 91 35.2
Duzib138G0307 Durio zibethinus HOM05D001448 ORTHO05D005781 3.9e-06 57.0 106 34.0
Manes.05G087700 Manihot esculenta HOM05D001448 ORTHO05D005781 3.9e-06 57.0 104 34.6
Nitab4.5_0000086g0180 Nicotiana tabacum HOM05D001448 ORTHO05D005781 6.6e-06 56.2 79 39.2
Potri.002G041300 Populus trichocarpa HOM05D001448 ORTHO05D005781 6.6e-06 56.2 79 39.2
Lj2C1155G3 Lonicera japonica HOM05D001448 ORTHO05D005781 8.6e-06 55.8 78 41.0


User provided reference genes

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