Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.4e-110 402.1 198 100.0
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.2e-53 213.8 168 69.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 6.7e-52 208.0 170 67.6
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 8.7e-52 207.6 170 67.1
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 8.2e-50 201.1 168 66.7
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.4e-49 199.5 170 65.9
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 9.4e-46 187.6 170 59.4
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 9.4e-46 187.6 170 59.4
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.2e-45 187.2 170 59.4
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.8e-44 183.3 170 60.6
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.5e-43 180.3 170 57.6
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 5.7e-43 178.3 170 55.9
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 7.4e-43 177.9 166 59.0
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 2.2e-42 176.4 170 55.9
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 2.8e-42 176.0 170 56.5
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-41 174.1 170 55.3
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.1e-41 174.1 170 55.3
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.4e-41 173.7 170 55.9
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 2.4e-41 172.9 170 55.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 3.1e-41 172.6 170 54.7
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.1e-41 172.6 170 54.7
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.1e-41 172.2 170 54.7
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 4.1e-41 172.2 170 54.7
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.9e-41 171.4 163 56.4
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.5e-40 170.2 170 52.4
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.5e-40 170.2 170 54.7
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.5e-40 170.2 170 54.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 2.6e-40 169.5 170 54.7
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 3.4e-40 169.1 170 54.1
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 3.4e-40 169.1 170 54.1
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.9e-40 168.3 164 56.1
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.7e-40 167.9 170 54.1
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 7.7e-40 167.9 170 53.5
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 7.7e-40 167.9 191 51.3
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-39 167.2 170 54.7
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-39 167.2 170 54.7
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.2e-39 166.4 170 54.7
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.2e-39 166.4 193 50.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 3.8e-39 165.6 170 55.3
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.0e-39 165.2 166 54.8
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 6.5e-39 164.9 170 54.7
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 6.5e-39 164.9 170 54.7
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 6.5e-39 164.9 170 52.9
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 6.5e-39 164.9 166 53.6
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 6.5e-39 164.9 170 52.9
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 1.9e-38 163.3 170 52.9
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.9e-38 163.3 170 54.1
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.9e-38 163.3 170 54.1
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.9e-38 163.3 170 52.9
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.5e-38 162.9 170 52.4
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 2.5e-38 162.9 170 52.9
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.5e-38 162.9 170 53.5
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 4.2e-38 162.2 170 52.4
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 5.5e-38 161.8 161 54.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 5.5e-38 161.8 170 52.4
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 5.5e-38 161.8 170 54.1
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 5.5e-38 161.8 170 50.6
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 7.2e-38 161.4 170 53.5
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 9.4e-38 161.0 161 54.0
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.2e-37 160.6 170 53.5
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.2e-37 160.6 170 51.8
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.6e-37 160.2 170 52.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.7e-37 159.5 170 52.9
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 3.6e-37 159.1 173 51.4
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 3.6e-37 159.1 170 48.2
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.6e-37 159.1 170 49.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.0e-36 157.5 170 52.9
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.0e-36 157.5 170 50.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 2.3e-36 156.4 170 51.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 3.0e-36 156.0 170 48.8
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 3.0e-36 156.0 170 49.4
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.0e-36 156.0 154 56.5
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.0e-36 156.0 170 48.8
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 5.1e-36 155.2 170 52.9
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 5.1e-36 155.2 153 54.9
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 6.7e-36 154.8 170 51.8
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 6.7e-36 154.8 170 54.7
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 6.7e-36 154.8 170 46.5
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 6.7e-36 154.8 123 64.2
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 6.7e-36 154.8 170 50.0
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 8.8e-36 154.5 170 50.6
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 8.8e-36 154.5 170 48.8
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.1e-35 154.1 170 51.2
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.1e-35 154.1 170 49.4
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.1e-35 154.1 170 49.4
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.0e-35 153.3 170 50.6
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.3e-35 152.5 170 50.0
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 4.4e-35 152.1 170 47.6
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 5.7e-35 151.8 170 48.8
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 7.4e-35 151.4 170 50.6
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 7.4e-35 151.4 170 50.6
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 7.4e-35 151.4 170 48.8
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 7.4e-35 151.4 170 50.0
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 9.7e-35 151.0 170 50.0
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.3e-34 150.6 170 50.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.7e-34 150.2 170 50.0
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.7e-34 150.2 170 50.0
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.7e-34 150.2 170 50.0
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 6.3e-34 148.3 170 51.2
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.1e-33 147.5 170 49.4
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 1.4e-33 147.1 163 50.9
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.4e-33 147.1 170 49.4
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.3e-33 145.2 170 48.8
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 7.0e-33 144.8 170 49.4
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.5e-32 142.5 126 61.1
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.0e-31 141.0 156 51.9
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.3e-31 140.6 184 46.2
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 2.7e-29 132.9 170 45.3
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.0e-28 129.4 170 44.7
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 3.0e-28 129.4 191 42.4
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.5e-27 127.1 125 53.6
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.6e-27 126.3 125 54.4
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.4e-25 119.8 141 47.5
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.7e-24 116.3 142 47.2
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.5e-24 115.9 151 47.0
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.5e-24 115.5 99 59.6
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.1e-22 110.9 123 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.5e-22 109.8 117 47.9
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.2e-21 107.5 142 43.7
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.0e-20 104.4 141 43.3
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.3e-20 103.2 58 81.0
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 5.2e-20 102.1 115 43.5
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 8.8e-20 101.3 88 59.1
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 8.8e-20 101.3 68 70.6
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.4e-19 99.4 140 39.3
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 9.8e-19 97.8 63 69.8
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.7e-18 97.1 118 46.6
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.8e-18 96.3 133 46.6
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 4.7e-13 79.0 85 47.1
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.2e-11 74.3 110 38.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.0e-11 73.6 151 35.1
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 2.3e-07 60.1 65 49.2


User provided reference genes

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