Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1700.6 845 100.0
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1643.6 837 96.1
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1560.0 861 89.4
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1533.9 861 87.8
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1527.7 861 87.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1523.5 861 87.3
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1511.9 845 87.6
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1502.6 920 82.0
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1498.0 842 86.2
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1497.6 851 85.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1494.9 851 85.5
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1493.8 920 81.3
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1492.2 851 85.7
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1487.6 851 85.2
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1484.2 842 85.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1480.3 846 85.0
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1480.3 849 84.8
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1473.0 846 84.5
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1472.6 845 84.0
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1472.6 842 84.8
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1470.7 842 85.0
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1469.1 842 84.6
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1468.0 845 83.8
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1464.5 845 85.6
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1461.4 838 85.6
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1457.6 846 84.0
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1446.8 844 83.2
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1443.3 846 83.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1442.9 845 82.5
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1440.6 845 82.5
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1440.6 850 83.2
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1439.9 849 83.6
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1439.1 845 84.1
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1432.2 863 81.3
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1419.8 846 82.6
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 849 82.2
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1414.1 845 82.0
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1412.5 852 83.2
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1409.4 847 81.3
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1408.3 847 81.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1404.4 845 81.2
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1400.6 846 81.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 848 81.0
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1397.5 911 76.5
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1391.7 847 79.8
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1390.6 847 80.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1387.9 845 80.6
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1384.0 845 79.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1381.3 924 75.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1377.8 851 80.1
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 849 78.4
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 895 75.9
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 845 80.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 910 76.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1374.0 845 79.4
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1371.7 847 79.1
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 868 77.5
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1366.7 851 79.9
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1366.3 849 78.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 865 78.0
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1365.5 845 78.9
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 860 79.2
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1356.3 845 78.9
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 842 77.9
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 848 77.7
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 845 78.6
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 864 76.2
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1339.3 848 77.8
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 875 77.0
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1328.9 843 76.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 848 76.8
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1322.8 866 75.6
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1322.8 866 75.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1317.4 866 75.3
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1317.4 866 75.3
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1317.4 866 75.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 866 75.3
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1314.7 950 70.1
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1314.3 866 75.1
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1314.3 866 75.2
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1309.7 866 74.8
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 763 83.6
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1305.4 866 74.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1303.1 866 74.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1282.7 788 78.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1275.8 839 73.1
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1266.9 858 72.0
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1266.1 842 73.9
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1244.6 727 83.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1154.4 841 70.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1144.4 848 68.8
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1114.8 852 69.1
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1113.2 844 62.9
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1097.0 836 63.4
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1089.7 1142 55.0
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1089.3 881 63.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.8e-300 1035.8 840 59.4
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.2e-291 1006.5 858 64.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 4.4e-286 988.0 697 73.0
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 8.0e-280 967.2 805 62.9
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 5.4e-276 954.5 625 74.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 7.3e-257 891.0 729 65.6
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 5.6e-241 838.2 603 68.2
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.8e-229 798.9 686 62.5
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 7.9e-211 738.0 469 80.2
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.7e-209 731.9 475 74.1
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.9e-206 721.8 433 82.9
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-187 660.2 604 58.4
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.7e-187 659.8 408 76.5
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 8.0e-179 631.7 846 41.4
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.3e-178 630.2 369 87.0
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.8e-176 623.2 341 90.3
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.8e-161 572.4 858 39.0
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.7e-158 563.5 359 74.7
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.2e-144 517.3 828 36.0
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.8e-131 473.0 434 57.1
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 9.6e-124 448.7 1007 31.6
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.2e-118 431.8 330 60.0
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-117 427.9 596 45.1
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.2e-113 415.2 377 61.8
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-104 385.6 332 57.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-95 355.1 263 64.6
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.6e-81 307.8 320 51.2
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.0e-80 305.8 240 64.2
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 8.5e-80 302.8 165 87.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 8.5e-80 302.8 218 67.4
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-73 282.0 158 78.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-44 185.3 97 89.7
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-37 161.8 113 69.0
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 8.9e-37 159.8 101 76.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 4.4e-36 157.5 129 68.2
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-32 144.8 98 76.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-32 144.4 95 76.8
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-30 138.7 94 74.5
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-30 138.7 85 77.6
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.4e-29 135.2 119 58.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 5.2e-29 134.0 91 74.7
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-28 132.9 87 72.4
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-28 132.9 191 47.6
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-28 132.9 67 89.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-27 127.9 102 69.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.9e-26 125.6 122 59.8
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.4e-26 124.0 125 60.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-24 119.4 103 65.0
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-24 119.0 134 52.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 6.6e-24 117.1 131 55.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 8.7e-24 116.7 80 68.8
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-23 116.3 68 77.9
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 5.6e-23 114.0 107 56.1
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-20 104.0 96 60.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-18 98.6 115 48.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 2.7e-17 95.1 54 90.7
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-16 91.7 52 80.8
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 6.6e-16 90.5 52 78.8
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 5.6e-15 87.4 78 62.8
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.4e-13 82.8 87 51.7
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.4e-13 82.8 87 51.7
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.0e-13 81.3 49 83.7
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 8.4e-11 73.6 200 29.5
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.4e-10 72.8 79 50.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-09 69.7 37 89.2
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 4.6e-09 67.8 85 50.6
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-07 62.8 41 73.2


User provided reference genes

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