Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 0.0e+00 1708.0 864 100.0
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 0.0e+00 1233.0 929 71.7
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1164.8 968 66.3
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 0.0e+00 1087.0 965 63.4
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 0.0e+00 1075.1 976 62.5
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 7.1e-308 1060.4 969 60.9
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 2.1e-307 1058.9 988 58.6
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 6.0e-307 1057.4 999 60.7
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 5.3e-303 1044.3 988 58.1
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 8.4e-301 1036.9 1024 57.9
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 7.4e-289 997.3 972 57.7
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 1.9e-268 929.5 978 54.7
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 3.2e-268 928.7 974 54.3
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 3.0e-258 895.6 962 55.0
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.2e-256 889.4 978 52.9
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 8.3e-256 887.5 940 53.7
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.8e-255 886.3 902 55.9
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.2e-254 883.6 997 52.1
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 7.7e-254 880.9 954 53.6
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 5.0e-253 878.2 910 54.6
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 9.5e-252 874.0 930 55.8
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.1e-251 872.8 853 57.0
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.8e-250 869.8 939 53.9
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 7.5e-249 864.4 960 53.3
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 6.4e-248 861.3 892 54.5
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 9.2e-247 857.4 933 53.8
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 7.8e-246 854.4 962 50.9
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 3.3e-244 849.0 970 50.5
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.2e-243 847.0 997 49.4
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.6e-243 846.7 932 53.3
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.0e-242 844.0 935 52.6
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 2.0e-241 839.7 858 56.5
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 3.4e-241 839.0 927 53.5
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 9.8e-241 837.4 947 52.0
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 4.9e-240 835.1 936 50.6
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.1e-239 833.9 939 51.9
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 1.7e-237 826.6 930 52.3
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 2.5e-236 822.8 932 50.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 5.6e-236 821.6 955 51.1
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 6.2e-235 818.1 960 50.6
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 8.1e-235 817.8 934 50.0
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 4.0e-234 815.5 964 49.0
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.5e-233 813.5 933 49.9
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 2.0e-233 813.1 928 51.6
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 3.7e-232 808.9 982 50.4
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.4e-231 807.0 956 49.1
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.0e-229 800.8 858 54.3
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 3.0e-229 799.3 934 50.4
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 1.1e-228 797.3 952 49.7
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.5e-228 796.2 871 52.1
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 9.5e-228 794.3 721 59.2
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 4.0e-226 788.9 941 49.4
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.0e-226 788.9 1002 49.0
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.1e-223 780.8 830 54.1
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 2.1e-222 776.5 993 47.3
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 4.6e-222 775.4 943 48.5
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.7e-221 773.5 978 48.4
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 7.6e-217 758.1 944 46.5
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 2.9e-216 756.1 954 47.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 6.4e-216 755.0 968 47.1
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 3.2e-215 752.7 951 47.4
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 7.1e-215 751.5 938 47.8
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 1.2e-214 750.7 930 47.6
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 1.5e-212 743.8 971 47.1
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.3e-211 740.7 997 46.2
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 4.8e-211 738.8 944 46.9
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.5e-209 733.8 933 47.1
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 3.5e-206 722.6 950 45.7
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 7.9e-206 721.5 744 55.0
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.3e-205 720.7 681 57.9
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 8.7e-205 718.0 941 46.3
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 3.3e-204 716.1 933 46.2
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 4.3e-204 715.7 974 44.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 3.7e-203 712.6 950 44.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.0e-202 709.1 946 45.7
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 6.9e-202 708.4 863 48.2
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 3.4e-201 706.1 930 45.7
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.3e-200 704.1 897 47.0
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 2.2e-200 703.4 934 45.9
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 4.9e-200 702.2 841 47.9
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 5.5e-199 698.7 684 55.0
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 7.1e-199 698.4 946 45.3
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.1e-198 696.8 946 45.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 6.0e-198 695.3 969 44.5
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 5.1e-197 692.2 855 47.3
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 3.7e-195 686.0 729 52.9
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.0e-193 680.2 930 45.3
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 4.5e-193 679.1 830 48.0
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.6e-190 670.6 907 44.9
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 3.5e-190 669.5 988 43.5
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 6.3e-187 658.7 825 48.0
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.1e-183 647.9 901 43.6
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 3.7e-179 632.9 622 55.1
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 1.3e-176 624.4 866 44.1
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.7e-176 624.0 675 51.6
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 1.6e-174 617.5 1008 41.5
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 3.6e-174 616.3 699 51.4
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 9.7e-172 608.2 823 44.8
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.3e-171 607.8 892 42.3
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 3.0e-165 586.6 713 49.6
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 3.7e-163 579.7 1001 39.4
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.8e-162 577.4 478 64.9
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.5e-132 478.0 928 37.1
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.2e-130 470.3 933 36.8
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.6e-129 468.0 1042 34.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.9e-115 420.6 949 34.0
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 1.5e-111 408.3 874 34.3
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 8.1e-102 375.9 263 70.7
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 4.5e-92 343.6 893 29.8
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.9e-59 234.6 204 57.8
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.1e-49 201.8 547 30.0
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 9.7e-47 193.0 382 33.0
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.1e-42 179.5 382 31.9
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.8e-40 172.2 192 52.6
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 7.5e-31 140.2 136 52.2
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 1.2e-25 122.9 203 40.4
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.8e-24 119.0 317 27.8
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.2e-24 117.5 442 23.3
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.3e-22 112.8 197 39.6
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.0e-19 103.2 484 23.3
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 8.0e-17 93.6 85 57.6
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 9.8e-15 86.7 112 43.8


User provided reference genes

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