Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 0.0e+00 1456.8 754 100.0
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 0.0e+00 1166.4 757 80.6
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 5.3e-299 1030.8 764 71.6
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 3.4e-298 1028.1 742 73.0
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.1e-296 1020.4 764 71.1
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.6e-295 1017.7 786 69.2
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 5.1e-294 1014.2 764 70.5
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 3.1e-267 925.2 756 64.8
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 7.0e-267 924.1 756 64.7
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 2.0e-266 922.5 792 63.5
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 3.0e-254 882.1 775 61.2
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 4.0e-254 881.7 695 66.5
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 3.4e-253 878.6 916 54.9
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 6.6e-249 864.4 636 71.2
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 6.1e-247 857.8 785 58.6
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.4e-246 856.7 732 62.0
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 2.3e-246 855.9 672 66.8
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 2.0e-245 852.8 775 59.9
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 2.0e-245 852.8 786 59.4
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 3.4e-245 852.0 758 59.2
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.2e-244 849.4 745 60.4
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 4.5e-242 841.6 730 63.2
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.7e-241 839.7 760 58.8
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 5.8e-237 824.7 815 56.9
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 7.5e-237 824.3 762 60.0
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 3.7e-236 822.0 747 59.0
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 6.4e-236 821.2 759 58.6
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 2.3e-233 812.8 715 59.4
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 3.9e-233 812.0 752 58.6
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.5e-232 810.1 729 59.9
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 7.3e-232 807.7 719 60.2
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 7.3e-232 807.7 750 59.1
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 1.6e-231 806.6 692 60.1
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 4.7e-231 805.1 721 59.8
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 6.8e-230 801.2 719 59.9
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 8.9e-230 800.8 690 60.3
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.2e-229 800.4 789 55.6
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 3.7e-228 795.4 738 56.5
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 3.2e-227 792.3 1117 44.5
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 5.4e-227 791.6 770 55.7
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 4.6e-226 788.5 765 57.6
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.5e-224 783.5 724 57.3
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 9.5e-224 780.8 735 57.6
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 4.7e-223 778.5 735 57.3
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.4e-222 776.9 791 53.6
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.8e-222 776.5 732 56.6
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 5.2e-222 775.0 745 56.8
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 3.4e-221 772.3 755 56.0
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 1.3e-220 770.4 732 55.6
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.7e-220 770.0 765 56.1
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 5.4e-219 765.0 729 56.1
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 9.2e-219 764.2 755 55.1
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 1.6e-218 763.5 759 55.1
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 4.6e-218 761.9 730 56.6
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 6.0e-218 761.5 709 57.1
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 2.3e-217 759.6 731 56.8
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 1.2e-215 753.8 791 54.1
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 3.6e-215 752.3 695 57.7
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 8.1e-215 751.1 763 54.3
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 4.2e-211 738.8 733 55.0
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 9.2e-211 737.6 723 54.9
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.7e-210 736.1 682 59.2
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 7.8e-210 734.6 670 56.6
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 3.9e-209 732.3 736 54.1
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 5.1e-209 731.9 702 54.6
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 3.3e-208 729.2 707 56.0
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 3.3e-208 729.2 781 52.8
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 7.3e-208 728.0 748 56.3
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 1.2e-207 727.2 708 54.4
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.2e-207 727.2 741 53.7
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 1.6e-207 726.9 708 54.4
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 8.1e-207 724.5 687 55.3
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.8e-206 723.4 718 53.9
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.5e-205 720.3 797 51.7
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.6e-205 719.5 737 53.6
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 9.9e-205 717.6 720 53.8
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 9.9e-205 717.6 733 53.8
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 4.9e-204 715.3 693 55.7
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.4e-203 713.0 754 52.3
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.0e-201 707.6 672 56.2
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.3e-201 707.2 669 56.2
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.3e-201 707.2 775 51.9
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 6.6e-201 704.9 687 54.7
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 5.6e-200 701.8 776 51.2
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 7.3e-200 701.4 709 53.0
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 2.8e-199 699.5 702 53.8
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 1.8e-198 696.8 594 60.4
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.5e-197 693.7 693 55.0
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.6e-197 693.0 663 55.1
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.4e-195 687.2 734 53.1
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 6.7e-193 678.3 730 51.1
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 1.8e-174 617.1 777 45.8
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 4.1e-174 615.9 708 48.3
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.9e-171 607.1 647 52.9
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.7e-162 575.9 726 47.9
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 7.0e-158 562.0 617 49.1
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 1.6e-154 550.8 730 43.4
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.5e-144 517.7 470 56.6
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.1e-142 511.5 679 46.8
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.3e-124 451.4 380 63.7
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 5.8e-120 436.0 409 56.7
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 4.9e-119 433.0 729 39.5
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 1.2e-106 391.7 307 65.8
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 8.6e-100 369.0 670 36.6
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.2e-98 365.2 613 37.2
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 5.8e-96 356.3 633 36.2
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 6.2e-90 336.3 619 37.6
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 5.3e-81 306.6 587 34.1
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.3e-81 306.6 325 51.1
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 6.0e-77 293.1 259 60.6
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 6.0e-69 266.5 677 32.2
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 4.1e-57 227.3 595 29.2
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 6.3e-50 203.4 297 41.8
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.2e-48 199.1 632 26.4
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 6.7e-44 183.3 654 28.4
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 9.1e-33 146.4 179 46.9
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 2.0e-32 145.2 474 26.4
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.2e-29 136.0 167 44.9
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 5.7e-27 127.1 258 38.8
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.3e-26 125.9 403 26.3
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.3e-23 115.9 174 42.5
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.5e-22 111.7 151 48.3
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 7.2e-22 110.2 177 40.1
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 2.0e-16 92.0 78 60.3
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.3e-15 89.4 73 64.4
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 5.6e-14 84.0 89 51.7
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 5.6e-14 84.0 104 42.3
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.5e-11 75.9 157 37.6
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 3.4e-11 74.7 189 30.2
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 6.4e-10 70.5 72 45.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.2e-09 68.2 49 61.2


User provided reference genes

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