Gene: AT1G72320

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G72320
  • Transcript Identifier AT1G72320.4
  • Gene Type Coding gene
  • Location Chr1 : 27228984-27232580 : negative

Gene Family Information

  • ID HOM05D005942
  • #Genes/#Species 132/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G72320.4
  • symbol PUM23
  • Alias APUM23,pumilio 23
  • uniprot Q9C552

Descriptions

  • Description pumilio 23
  • Computational description pumilio 23 (PUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 376 Blast hits to 376 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 142; Plants - 69; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0000056
IBA
Gene Ontologyribosomal small subunit export from nucleus1
GO:0000472
IBA
Gene Ontologyendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000447
IBA
Gene Ontologyendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000480
IBA
Gene Ontologyendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0010252
IMP
Gene Ontologyauxin homeostasis2
GO:0009749
IEP
Gene Ontologyresponse to glucose2
GO:0009744
IEP
Gene Ontologyresponse to sucrose2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030686
IBA
Gene Ontology90S preribosome1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
IBA
Gene Ontologynucleolus1 3
GO:0030688
IBA
Gene Ontologypreribosome, small subunit precursor1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001313 Pumilio RNA-binding repeat
IPR016024 Armadillo-type fold
IPR011989 Armadillo-like helical
IPR040000 Nucleolar protein 9
Mapman id Description
17.1.1.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA processing factor (APUM23)