Gene: AT1G72320
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G72320
- Transcript Identifier AT1G72320.4
- Gene Type Coding gene
- Location Chr1 : 27228984-27232580 : negative
Gene Family Information
- ID HOM05D005942
- #Genes/#Species 132/98
- Phylogenetic origin
- ID ORTHO05D007209
- #Genes/#Species 133/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G72320.4
- symbol PUM23
- Alias APUM23,pumilio 23
- uniprot Q9C552
Descriptions
- Description pumilio 23
- Computational description pumilio 23 (PUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 376 Blast hits to 376 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 142; Plants - 69; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006417 | IEA | GOA Database | regulation of translation | |
GO:0000056 | IBA | Gene Ontology | ribosomal small subunit export from nucleus | 1 |
GO:0000472 | IBA | Gene Ontology | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1 |
GO:0000447 | IBA | Gene Ontology | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1 |
GO:0000480 | IBA | Gene Ontology | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1 |
GO:0010252 | IMP | Gene Ontology | auxin homeostasis | 2 |
GO:0009749 | IEP | Gene Ontology | response to glucose | 2 |
GO:0009744 | IEP | Gene Ontology | response to sucrose | 2 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003723 | IEA | GOA Database | RNA binding | |
GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0030686 | IBA | Gene Ontology | 90S preribosome | 1 |
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | ISM | Gene Ontology | nucleus | |
GO:0005730 | IEA | GOA Database | nucleolus | |
GO:0005730 | IDA IBA | Gene Ontology | nucleolus | 1 3 |
GO:0030688 | IBA | Gene Ontology | preribosome, small subunit precursor | 1 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
17.1.1.3 | Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA processing factor (APUM23) |