Gene: Pp3c10_6430

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c10_6430
  • Transcript Identifier Pp3c10_6430V3.1
  • Gene Type Coding gene
  • Location Chr10 : 4562152-4566125 : negative

Gene Family Information

  • ID HOM05D005942
  • #Genes/#Species 132/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c10_6430V3.1
  • pacid 32901834
  • alias Phpat.010G024700
  • alias Phypa_171461
  • alias Pp1s293_80V6
  • uniprot A0A2K1JXY2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0000056
IBA
GOA Databaseribosomal small subunit export from nucleus
GO:0000447
IBA
GOA Databaseendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472
IBA
GOA Databaseendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480
IBA
GOA Databaseendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0009749
ISO
PLAZA Integrative Orthologyresponse to glucose AT1G72320
GO:0010252
ISO
PLAZA Integrative Orthologyauxin homeostasis AT1G72320
GO:0009744
ISO
PLAZA Integrative Orthologyresponse to sucrose AT1G72320

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030688
IBA
GOA Databasepreribosome, small subunit precursor
GO:0030686
IBA
GOA Database90S preribosome
GO:0005730
IBA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040000 Nucleolar protein 9
IPR011989 Armadillo-like helical
IPR001313 Pumilio RNA-binding repeat
IPR016024 Armadillo-type fold
Mapman id Description
17.1.1.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA processing factor (APUM23)