Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 6.9e-151 537.3 283 100.0
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 9.3e-132 473.8 287 88.2
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 6.1e-131 471.1 287 88.5
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.0e-125 453.8 283 79.9
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.7e-112 409.8 312 69.9
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.3e-112 407.9 260 80.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.1e-111 405.6 294 69.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.1e-111 405.6 260 79.6
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 2.2e-109 399.4 285 70.9
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 2.5e-108 396.0 283 73.1
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.2e-107 393.7 288 64.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.0e-106 390.6 285 68.4
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 5.2e-106 388.3 285 67.4
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.0e-105 386.3 270 71.5
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.7e-104 383.3 287 68.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-103 380.6 286 66.1
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-103 380.2 286 65.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.2e-102 377.1 286 72.0
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-102 376.7 204 91.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.6e-102 376.7 288 65.6
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.9e-102 374.8 286 65.4
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 7.7e-102 374.4 285 64.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.0e-101 374.0 286 64.7
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.3e-101 373.6 291 67.0
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.2e-101 372.9 294 70.1
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.2e-101 372.9 294 70.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-100 370.2 286 64.7
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.9e-100 369.8 273 70.0
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 5.5e-100 368.2 289 68.9
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.6e-99 366.7 288 64.9
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 6.1e-99 364.8 233 74.7
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.0e-98 364.0 285 64.9
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 2.3e-98 362.8 288 67.7
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 5.2e-98 361.7 292 64.0
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 6.8e-98 361.3 316 60.4
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 6.8e-98 361.3 220 81.4
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 1.2e-97 360.5 285 63.5
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.5e-97 360.1 287 65.9
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.5e-97 360.1 287 65.9
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 3.4e-97 359.0 287 63.8
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 9.8e-97 357.5 283 64.7
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.3e-96 357.1 289 62.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.7e-96 355.5 284 69.0
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 4.8e-96 355.1 259 69.9
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.1e-95 354.0 280 63.9
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.1e-95 354.0 290 62.8
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.1e-95 354.0 286 66.4
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.4e-95 353.6 283 61.5
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.4e-95 352.8 294 60.2
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 2.4e-95 352.8 282 62.1
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 7.0e-95 351.3 294 61.9
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 7.0e-95 351.3 285 67.7
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.0e-95 351.3 284 65.5
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 9.1e-95 350.9 280 63.6
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.6e-94 350.1 291 61.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.6e-94 350.1 291 61.9
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.6e-94 350.1 272 66.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 3.5e-94 349.0 291 61.2
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 3.5e-94 349.0 291 61.5
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 3.5e-94 349.0 291 61.2
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.5e-94 349.0 302 59.3
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 5.9e-94 348.2 288 61.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 5.9e-94 348.2 286 66.8
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 7.7e-94 347.8 290 62.1
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 7.7e-94 347.8 283 62.2
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 7.7e-94 347.8 285 63.5
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.0e-93 347.4 293 59.7
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.0e-93 347.4 219 79.5
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.7e-93 346.7 301 58.5
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.9e-93 345.9 232 72.8
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 3.8e-93 345.5 293 64.8
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 5.0e-93 345.1 294 60.9
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 5.0e-93 345.1 282 61.0
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 8.6e-93 344.4 278 60.4
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 8.6e-93 344.4 287 62.7
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.5e-92 343.6 294 61.2
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 7.2e-92 341.3 292 59.9
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 4.7e-91 338.6 283 59.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.7e-91 338.6 282 59.9
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 8.0e-91 337.8 276 68.1
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.0e-90 337.4 282 64.2
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.4e-90 337.0 286 65.0
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 4.0e-90 335.5 286 64.3
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.8e-90 334.7 291 64.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 8.9e-90 334.3 297 66.0
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.2e-89 334.0 253 66.4
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 3.4e-89 332.4 282 60.6
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 5.7e-89 331.6 286 64.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 2.2e-88 329.7 272 62.5
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 2.2e-88 329.7 283 61.5
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 6.3e-88 328.2 287 59.2
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.3e-88 328.2 260 62.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 8.3e-88 327.8 337 52.8
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 2.4e-87 326.2 288 58.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 5.4e-87 325.1 254 65.4
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-86 323.9 256 62.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 8.6e-85 317.8 234 62.8
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.2e-83 313.9 281 56.6
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 5.2e-82 308.5 323 50.8
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 3.4e-81 305.8 284 54.6
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.7e-80 303.5 232 78.0
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.6e-78 297.0 205 68.3
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.0e-77 292.7 210 66.2
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 3.0e-77 292.7 273 56.8
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 6.6e-77 291.6 225 66.2
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 6.2e-75 285.0 237 62.0
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 8.0e-75 284.6 280 53.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.9e-72 276.2 258 57.4
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.5e-68 263.8 149 91.3
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.5e-62 242.7 198 68.7
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.9e-60 236.9 277 47.3
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 7.3e-60 235.0 198 58.1
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.4e-58 230.7 201 62.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.0e-57 226.9 225 55.6
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 5.8e-57 225.3 189 57.7
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 4.9e-56 222.2 215 54.9
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 6.0e-54 215.3 181 63.0
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 3.0e-53 213.0 264 48.5
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 5.6e-52 208.8 217 50.2
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 7.3e-52 208.4 170 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 3.1e-50 203.0 257 42.8
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.2e-49 201.1 251 39.8
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.8e-48 196.1 130 71.5
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-47 194.5 272 41.9
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.8e-43 179.9 196 49.0
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.2e-43 178.7 109 75.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 8.1e-43 178.3 289 39.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 5.3e-42 175.6 120 68.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.8e-41 172.2 198 50.0
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 3.2e-39 166.4 113 69.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.8e-32 142.9 103 64.1
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 4.2e-31 139.4 301 34.2
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.7e-27 126.3 84 71.4
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.4e-26 124.4 200 43.5
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 5.3e-26 122.5 218 39.4
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.6e-19 100.9 171 39.2
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 7.7e-17 92.0 247 29.1
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.0e-16 91.7 201 31.3
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.9e-08 63.5 83 62.7


User provided reference genes

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