Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1888.2 1075 100.0
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1610.5 1090 84.8
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1607.0 1083 84.1
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1466.4 1085 73.1
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 0.0e+00 1416.0 1096 70.3
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1415.2 1096 70.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1380.9 1092 69.4
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1338.6 1096 67.7
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1273.5 1158 61.6
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1264.2 1092 62.6
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1256.9 1155 61.4
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1253.4 1192 62.3
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1246.5 1095 66.5
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1241.5 1095 62.6
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1236.9 1098 61.9
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1227.6 1093 61.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1209.5 1150 59.9
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1201.4 1098 62.5
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1195.3 1092 60.1
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1191.0 1103 61.2
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1189.5 1096 59.9
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1188.7 1096 59.9
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1188.3 1096 59.9
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1182.2 1102 61.5
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1180.2 1098 61.5
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1169.8 1099 59.4
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1167.5 1094 63.6
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1164.4 1096 60.7
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1157.5 1105 59.2
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1154.8 1127 61.7
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 0.0e+00 1154.0 1095 59.5
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1153.3 1102 60.0
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1152.5 1127 58.5
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1150.6 1102 59.8
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1150.6 1135 58.1
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 0.0e+00 1146.3 1094 59.3
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1144.4 1099 60.7
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1140.9 1134 58.3
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1137.5 1091 59.0
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1135.2 1032 62.2
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1129.0 1092 61.0
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 0.0e+00 1124.0 1124 57.7
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1116.3 1112 61.6
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1112.1 1084 57.6
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1109.0 1132 55.9
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 0.0e+00 1104.7 1105 59.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1102.4 1172 54.8
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1093.2 1083 57.5
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 0.0e+00 1082.8 1080 58.1
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 0.0e+00 1077.8 1137 55.9
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.1e-309 1065.8 1162 55.1
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 4.1e-305 1051.6 986 60.0
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 5.4e-305 1051.2 1100 57.1
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.3e-303 1046.6 1088 55.9
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 6.6e-303 1044.3 1099 57.1
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 3.3e-294 1015.4 1108 54.3
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.6e-293 1013.1 1103 55.8
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 3.6e-293 1011.9 1106 54.9
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.2e-290 1002.7 1107 53.7
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 8.1e-285 984.2 1091 54.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.4e-283 978.4 1091 55.1
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 7.1e-281 971.1 1109 53.1
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 3.5e-280 968.8 1109 52.2
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 8.7e-279 964.1 1095 52.4
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.6e-277 959.9 1079 54.4
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.4e-276 956.1 1101 52.4
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.4e-276 956.1 1101 52.4
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 2.0e-275 953.0 1140 51.1
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 7.6e-275 951.0 865 61.7
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.8e-274 948.7 1107 51.7
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 3.8e-274 948.7 1102 52.7
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 3.8e-274 948.7 973 57.9
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.0e-271 940.6 1095 51.7
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.7e-271 939.9 1146 50.0
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.1e-269 932.9 1092 53.5
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 4.8e-269 931.8 1063 53.5
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 4.0e-268 928.7 1175 49.1
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.9e-268 927.9 1119 49.9
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.6e-267 926.0 1086 50.8
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 6.4e-266 921.4 1069 52.5
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 6.7e-263 911.4 1242 47.7
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.1e-262 910.6 1092 52.1
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.2e-259 900.6 1109 51.6
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 6.5e-258 894.8 1109 49.6
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 4.1e-252 875.5 1112 48.7
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 4.1e-252 875.5 1112 48.7
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 8.7e-247 857.8 594 74.1
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 1.1e-246 857.4 1160 47.8
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.1e-246 857.4 784 59.9
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 1.6e-245 853.6 619 71.4
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 4.1e-244 849.0 1111 49.5
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 2.7e-240 836.3 1101 48.6
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 2.7e-240 836.3 897 53.7
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 1.4e-239 833.9 1101 48.5
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.3e-239 833.2 997 55.1
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.1e-236 822.8 1101 46.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 4.1e-236 822.4 947 53.6
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 5.3e-236 822.0 1104 47.7
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 6.9e-236 821.6 1107 47.9
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 9.1e-236 821.2 1106 47.9
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.2e-235 820.8 1192 47.2
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 2.2e-234 816.6 1092 49.4
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.3e-229 800.8 1105 47.8
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.6e-227 793.9 1113 47.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.6e-227 793.9 1113 47.0
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 5.9e-227 792.0 959 50.9
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.8e-220 770.4 1041 46.4
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.5e-214 750.7 622 65.4
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.5e-209 733.4 903 56.7
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.7e-195 686.8 1040 43.3
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.0e-194 682.6 524 67.4
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.5e-185 654.4 626 57.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 4.3e-177 626.3 621 55.7
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 2.8e-176 623.6 623 55.5
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.2e-174 618.2 609 56.2
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 5.2e-167 592.8 893 42.6
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 3.2e-164 583.6 427 70.0
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 4.2e-164 583.2 1086 45.0
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 8.7e-154 548.9 957 40.5
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.4e-153 545.8 364 73.6
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.8e-149 533.5 363 73.0
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 2.7e-147 527.3 920 41.3
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 8.1e-144 515.8 1021 38.7
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 9.3e-140 502.3 622 49.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.1e-136 491.1 570 53.2
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.5e-121 441.8 348 66.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 7.7e-118 429.5 728 40.4
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 7.7e-118 429.5 356 62.9
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.0e-113 414.8 333 66.7
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.2e-96 358.2 468 47.0
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.7e-93 348.6 379 54.4
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 2.5e-92 344.7 613 39.5
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 7.8e-78 296.6 620 40.2
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 7.8e-78 296.6 620 40.2
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.1e-74 284.6 331 55.0
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 8.1e-67 260.0 256 56.2
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.8e-66 258.8 376 41.8
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.3e-61 241.9 297 43.8
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 1.2e-59 236.1 455 38.0
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.6e-57 228.4 263 49.4
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.3e-52 211.1 160 68.8
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 1.6e-51 209.1 276 52.2
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 7.6e-49 200.3 342 36.8
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.2e-48 198.7 154 68.2
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 5.4e-47 194.1 156 61.5
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 2.1e-46 192.2 179 57.5
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 5.1e-45 187.6 150 67.3
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.5e-44 186.0 154 63.0
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.1e-42 178.3 130 66.9
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 6.4e-40 170.6 135 68.9
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.6e-38 166.0 273 37.4
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 3.0e-37 161.8 138 62.3
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 1.9e-31 142.5 95 68.4
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.1e-28 133.3 85 77.6
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.9e-28 132.5 75 84.0
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.3e-27 129.8 75 82.7
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.7e-22 112.1 576 28.5
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 6.7e-21 107.5 428 30.1
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 4.5e-17 94.7 159 37.7
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 1.4e-15 89.7 115 48.7
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.4e-15 89.7 100 53.0
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.2e-14 86.7 49 81.6
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.0e-13 83.6 49 77.6
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 1.0e-13 83.6 68 61.8
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.4e-13 83.2 52 71.2
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.3e-13 82.4 83 49.4
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 3.0e-13 82.0 54 81.5
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 6.7e-13 80.9 47 74.5
Psat1g094640 Pisum sativum HOM05D000467 ORTHO05D000379 1.8e-10 72.8 58 63.8
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 6.9e-10 70.9 54 66.7
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.5e-09 69.7 49 67.3
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 3.4e-09 68.6 59 52.5
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 4.5e-09 68.2 106 44.3
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 1.6e-06 59.7 263 25.9
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 2.1e-06 59.3 261 27.2
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 2.7e-06 58.9 263 27.4
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 4.7e-06 58.2 263 26.6
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 6.1e-06 57.8 261 26.8


User provided reference genes

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