Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 0.0e+00 1260.4 640 100.0
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 5.7e-294 1013.8 676 78.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 7.2e-265 917.1 673 71.9
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.8e-253 878.6 673 69.7
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.2e-251 873.2 673 69.2
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.9e-251 870.9 694 67.7
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 2.6e-246 855.5 681 67.1
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.7e-245 851.7 725 64.4
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 2.4e-244 849.0 678 67.3
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 3.5e-243 845.1 675 67.1
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.3e-237 826.6 708 63.6
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 6.4e-237 824.3 680 65.3
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 7.1e-236 820.8 681 65.6
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 6.6e-234 814.3 680 64.6
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.9e-233 812.8 675 63.9
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 4.3e-233 811.6 684 65.4
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 2.8e-232 808.9 676 63.8
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.7e-232 808.1 674 64.5
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.8e-231 806.2 676 63.6
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 4.0e-231 805.1 678 62.8
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 5.8e-230 801.2 676 64.1
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.9e-228 796.2 676 63.0
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 9.2e-228 793.9 673 63.3
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.7e-226 789.6 675 61.5
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.9e-225 786.2 716 59.4
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 4.0e-223 778.5 667 62.7
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.9e-221 772.3 691 60.8
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 2.9e-221 772.3 672 61.0
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.1e-217 760.4 699 59.9
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 2.5e-217 759.2 675 60.0
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 3.3e-217 758.8 680 61.6
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 2.8e-216 755.7 678 60.2
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 4.0e-215 751.9 677 60.1
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 9.9e-214 747.3 674 59.8
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.1e-212 743.8 670 59.7
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.2e-212 742.3 674 59.6
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 4.2e-212 741.9 680 60.4
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 3.0e-210 735.7 692 58.2
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 8.7e-210 734.2 603 64.5
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 2.4e-207 726.1 666 58.0
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.2e-204 715.7 706 56.9
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 5.4e-204 714.9 707 57.7
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.1e-203 713.0 682 58.1
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 3.9e-202 708.8 637 60.4
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.6e-201 704.9 616 62.0
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.1e-199 700.7 843 50.7
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.4e-196 690.3 705 55.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.2e-195 687.2 669 57.2
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.0e-194 684.1 681 57.7
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.8e-194 683.3 643 58.9
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 3.0e-194 682.6 682 57.9
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.7e-192 675.6 732 52.3
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 6.2e-192 674.9 691 55.6
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.4e-191 673.7 662 56.6
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.0e-190 669.8 688 55.4
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.5e-188 662.9 670 56.1
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 5.5e-188 661.8 678 55.2
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 5.5e-188 661.8 690 55.5
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 7.1e-188 661.4 676 55.2
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 6.1e-187 658.3 682 55.0
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 7.9e-187 657.9 687 54.7
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 3.9e-186 655.6 682 54.7
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.5e-185 653.7 681 54.3
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 8.2e-184 647.9 697 53.5
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 8.2e-184 647.9 679 53.9
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 8.2e-184 647.9 679 53.9
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 8.2e-184 647.9 679 53.9
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 2.0e-182 643.3 603 60.9
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 4.6e-179 632.1 666 53.9
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 5.7e-177 625.2 533 62.5
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 3.7e-176 622.5 693 53.0
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.7e-174 614.8 566 60.2
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-171 607.4 679 51.3
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 1.2e-171 607.4 606 57.8
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 5.1e-170 602.1 671 53.4
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 3.8e-165 585.9 672 49.7
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.8e-162 577.0 681 51.0
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 8.8e-162 574.7 585 56.1
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 7.0e-159 565.1 583 57.1
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 7.7e-158 561.6 509 57.6
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.7e-157 560.5 506 58.3
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 4.7e-155 552.4 671 49.0
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.0e-154 551.2 677 48.0
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 6.8e-154 548.5 674 48.2
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 2.0e-153 547.0 599 54.1
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.7e-150 536.6 649 49.3
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.5e-148 530.8 677 47.4
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.3e-144 517.7 674 46.6
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.7e-144 517.3 680 47.1
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.2e-144 516.9 539 55.1
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 4.9e-144 515.8 672 47.5
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 5.4e-143 512.3 464 59.7
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 9.1e-143 511.5 673 46.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.6e-139 499.6 678 45.4
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 2.3e-114 417.2 682 38.6
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 6.8e-114 415.6 569 44.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 8.6e-109 398.7 676 38.3
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.8e-107 393.7 664 41.9
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 6.2e-107 392.5 676 38.8
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 5.8e-105 386.0 767 36.9
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.2e-103 380.2 273 72.2
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 5.4e-103 379.4 468 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 1.9e-100 370.9 673 34.9
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.4e-98 364.8 564 42.6
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.9e-92 344.4 466 46.6
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 3.4e-89 333.6 525 40.4
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 4.9e-88 329.7 425 47.5
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.6e-78 298.1 254 61.4
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.6e-75 288.1 224 68.8
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.6e-75 288.1 224 67.0
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 3.1e-74 283.9 312 52.9
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 9.3e-71 272.3 911 27.2
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.8e-61 241.5 152 81.6
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.5e-57 226.9 174 66.7
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.9e-49 199.9 169 64.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 3.2e-47 194.1 286 43.7
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.1e-46 191.4 167 62.9
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.4e-45 188.7 377 37.7
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 5.2e-45 186.8 167 58.7
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 2.0e-44 184.9 162 63.0
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.9e-40 171.0 105 79.0
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.8e-40 170.6 175 58.3
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.7e-38 164.5 124 69.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.6e-38 164.1 137 58.4
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.5e-36 158.7 135 65.2
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 9.8e-36 156.0 102 75.5
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 8.3e-35 152.9 168 50.6
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-34 152.5 146 59.6
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.7e-33 147.9 174 50.0
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.2e-30 139.0 166 52.4
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.5e-28 132.1 143 53.8
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.6e-28 131.3 152 51.3
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 1.8e-26 125.2 107 59.8
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-26 124.8 107 59.8
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 5.4e-26 123.6 248 34.7
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.5e-25 120.6 91 69.2
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.4e-21 109.0 319 29.2
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 7.5e-20 103.2 55 85.5
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 3.7e-19 100.9 287 29.6
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 2.4e-18 98.2 165 39.4
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.2e-17 95.9 169 37.9
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.7e-17 94.7 55 76.4
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.6e-17 94.0 146 41.8
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.3e-16 92.4 53 83.0
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 3.9e-16 90.9 60 73.3
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 8.6e-16 89.7 114 46.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 6.8e-13 80.1 87 52.9
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.6e-06 57.8 44 61.4
SHI03977 Sapria himalayana HOM05D004944 ORTHO05D005989 4.7e-06 57.4 118 35.6


User provided reference genes

Program Settings