Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G019600 Prunus persica HOM05D004901 ORTHO05D005592 3.1e-295 1017.7 508 100.0
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 3.0e-205 718.8 636 64.9
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 3.6e-134 482.6 666 47.4
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 6.2e-118 428.7 649 44.1
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 2.6e-116 423.3 651 43.6
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 7.1e-114 415.2 655 43.1
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 6.9e-101 372.1 497 46.9
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 2.9e-99 366.7 593 43.7
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 3.9e-88 329.7 651 39.0
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 5.8e-84 315.8 635 38.4
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 3.8e-83 313.2 674 37.2
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 6.5e-83 312.4 655 37.4
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 4.8e-78 296.2 639 36.2
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 1.1e-71 275.0 642 36.8
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 3.3e-71 273.5 596 37.9
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 4.3e-71 273.1 688 33.6
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 7.4e-71 272.3 647 34.5
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 2.6e-68 263.8 627 35.9
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 1.4e-66 258.1 630 36.3
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 1.2e-65 255.0 630 34.4
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 2.1e-65 254.2 648 34.0
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 2.7e-65 253.8 630 34.3
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 3.1e-61 240.4 701 32.5
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 5.9e-60 236.1 574 34.8
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 8.8e-56 222.2 493 34.9
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 2.6e-55 220.7 630 32.4
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 5.3e-53 213.0 586 32.8
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 3.5e-52 210.3 612 32.2
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 1.7e-51 208.0 605 31.9
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 2.9e-51 207.2 625 32.0
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 5.0e-51 206.5 701 30.1
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 1.5e-50 204.9 603 32.3
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 1.9e-50 204.5 554 33.8
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 9.4e-50 202.2 646 30.7
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 3.6e-49 200.3 551 34.8
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 3.6e-49 200.3 613 32.1
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 6.1e-49 199.5 620 30.6
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 1.0e-48 198.7 638 29.9
CiPaw.03G019300 Carya illinoinensis HOM05D004901 ORTHO05D005592 1.4e-48 198.4 385 38.7
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 4.0e-48 196.8 488 35.2
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 4.0e-48 196.8 703 28.7
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 5.2e-48 196.4 600 30.7
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 6.8e-48 196.1 594 31.6
Cpa.g.sc66.23 Carica papaya HOM05D004901 ORTHO05D005592 6.8e-48 196.1 463 33.9
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 2.0e-47 194.5 442 33.7
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 4.4e-47 193.4 534 31.5
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 4.4e-47 193.4 606 30.4
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 4.4e-47 193.4 606 30.4
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 9.8e-47 192.2 596 30.7
CARHR034280 Cardamine hirsuta HOM05D004901 ORTHO05D005592 1.3e-46 191.8 575 33.4
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 1.7e-46 191.4 576 31.2
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 3.7e-46 190.3 586 31.1
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 4.1e-45 186.8 618 31.2
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 7.0e-45 186.0 562 32.7
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 4.5e-44 183.3 581 32.5
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 1.0e-43 182.2 469 32.8
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 1.0e-43 182.2 575 31.1
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 1.3e-43 181.8 527 34.2
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 1.3e-43 181.8 546 32.4
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 2.2e-43 181.0 557 33.2
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 3.8e-43 180.3 545 33.6
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 8.5e-43 179.1 683 28.3
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 3.2e-42 177.2 632 30.9
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 4.2e-42 176.8 567 30.3
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 4.2e-42 176.8 558 31.2
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 5.5e-42 176.4 514 33.9
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 1.6e-41 174.9 566 32.7
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 2.1e-41 174.5 566 32.2
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 2.7e-41 174.1 659 27.9
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 6.1e-41 172.9 535 33.1
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 8.8e-40 169.1 585 30.8
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 4.4e-39 166.8 560 31.1
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 6.3e-38 162.9 607 29.2
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 8.3e-38 162.5 568 28.7
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 2.4e-37 161.0 568 31.0
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 2.4e-37 161.0 570 30.5
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 9.1e-37 159.1 626 29.2
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 1.6e-36 158.3 575 29.2
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.3e-35 155.2 684 27.9
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 3.3e-34 150.6 579 29.9
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 2.8e-33 147.5 598 29.3
Nitab4.5_0000167g0280 Nicotiana tabacum HOM05D004901 ORTHO05D005592 5.6e-26 123.2 171 46.2
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 9.5e-26 122.5 392 29.8
SEGI_29563 Sequoiadendron giganteum HOM05D004901 ORTHO05D005592 2.1e-25 121.3 238 37.0
vmacro00755 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 1.8e-24 118.2 217 40.1
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 3.1e-24 117.5 586 26.6
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 4.0e-24 117.1 558 27.6
vmacro00754 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 1.2e-23 115.5 214 39.7
Peaxi162Scf00391g00531 Petunia axillaris HOM05D004901 ORTHO05D005592 2.0e-23 114.8 180 42.8
CDE04G3479 Ceratophyllum demersum HOM05D004901 ORTHO05D005592 4.4e-23 113.6 180 40.6
Nitab4.5_0003010g0060 Nicotiana tabacum HOM05D004901 ORTHO05D005592 9.8e-23 112.5 212 38.7
Solyc11g020760.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 9.8e-23 112.5 181 43.1
Aqoxy4G02416 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 2.9e-22 110.9 193 39.9
Atru.chr13.2409 Acer truncatum HOM05D004901 ORTHO05D005592 6.4e-22 109.8 62 88.7
RcHm_v2.0_Chr7g0228881 Rosa chinensis HOM05D004901 ORTHO05D005592 8.3e-22 109.4 62 88.7
Sc23g0001380 Simmondsia chinensis HOM05D004901 ORTHO05D005592 1.1e-21 109.0 62 87.1
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 1.4e-21 108.6 501 25.9
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 3.2e-21 107.5 443 27.8
AUR62004624 Chenopodium quinoa HOM05D004901 ORTHO05D005592 7.0e-21 106.3 61 86.9
AagrBONN_evm.TU.Sc2ySwM_228.534 Anthoceros agrestis HOM05D004901 ORTHO05D005592 1.0e-19 102.4 62 79.0
HPP92_004437 Vanilla planifolia HOM05D004901 ORTHO05D005592 2.3e-19 101.3 62 77.4
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 3.9e-19 100.5 62 79.0
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 5.0e-19 100.1 62 77.4
ClCG11G008680 Citrullus lanatus HOM05D004901 ORTHO05D005592 6.2e-17 93.2 119 48.7
Peaxi162Scf00391g00532 Petunia axillaris HOM05D004901 ORTHO05D005592 4.0e-16 90.5 159 41.5
Nitab4.5_0003010g0040 Nicotiana tabacum HOM05D004901 ORTHO05D005592 2.6e-15 87.8 302 30.5
Solyc11g020770.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 9.8e-15 85.9 302 29.1
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 4.9e-14 83.6 46 91.3
Nitab4.5_0000167g0270 Nicotiana tabacum HOM05D004901 ORTHO05D005592 2.7e-12 77.8 300 28.0
FAN03G2849 Fragaria x ananassa HOM05D004901 ORTHO05D005592 8.6e-11 72.8 44 79.5
Cre03.g208833 Chlamydomonas reinhardtii HOM05D004901 ORTHO05D005592 1.1e-10 72.4 62 53.2
PRCOL_00002915 Prasinoderma coloniale HOM05D004901 ORTHO05D005592 2.3e-08 64.7 59 50.8
Haze_26138 Corylus avellana HOM05D004901 ORTHO05D005592 3.1e-08 64.3 54 51.9
Aqoxy4G02415 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.3e-06 58.9 261 26.4
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 1.7e-06 58.5 107 33.6
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 4.9e-06 57.0 102 33.3
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 4.9e-06 57.0 55 47.3
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 6.4e-06 56.6 122 33.6
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 8.4e-06 56.2 122 32.8


User provided reference genes

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