Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1365.1 708 100.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1304.3 711 95.1
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1303.5 709 94.6
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1288.5 710 94.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1267.7 708 91.2
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1267.7 708 91.7
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1267.7 709 92.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1257.3 703 92.2
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1253.8 708 89.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1250.3 708 91.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1249.6 708 90.0
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1239.2 699 90.3
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1238.0 708 89.3
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1238.0 713 90.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1236.5 708 89.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1235.7 708 90.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1233.0 708 89.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1231.5 708 89.0
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1231.1 708 89.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1228.0 705 89.8
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 699 89.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1216.8 702 88.2
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1214.9 708 87.7
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1214.5 708 87.9
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 708 87.6
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 708 89.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 708 87.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1212.6 708 87.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1212.2 708 87.7
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1210.3 686 90.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1208.0 708 87.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1206.4 686 90.4
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 707 87.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1201.0 708 86.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 685 89.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 685 89.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 685 89.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1199.9 699 87.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1199.1 707 87.3
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1193.3 719 85.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1193.3 671 91.4
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 686 88.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1191.4 685 88.6
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 714 86.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 731 84.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 685 88.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 697 87.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 736 82.3
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1184.1 708 85.7
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1181.4 735 83.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1177.2 693 87.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1174.8 708 86.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1173.7 705 84.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 686 87.8
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 708 85.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 708 83.3
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 708 83.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 708 85.9
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 692 86.0
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 685 87.3
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 699 84.1
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 709 84.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 699 84.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 699 84.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 708 85.6
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 726 83.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 695 85.2
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 695 85.2
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 708 84.5
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 699 83.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 699 83.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 708 82.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 725 82.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 699 83.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 700 83.6
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 688 85.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 710 84.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 703 83.2
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 708 82.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 687 84.7
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 697 82.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 708 81.5
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 689 84.0
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 770 77.7
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 668 86.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 740 79.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 692 83.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 686 84.1
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 697 81.8
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 720 80.6
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 682 83.1
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 750 76.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 696 80.3
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 702 80.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1088.2 740 77.3
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1080.1 666 83.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.4e-309 1065.8 697 78.3
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.6e-305 1052.4 747 72.6
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.5e-303 1045.0 716 75.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.9e-292 1007.3 620 82.1
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.9e-288 994.6 631 82.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 8.2e-286 986.9 591 84.6
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.7e-281 971.1 689 70.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.7e-281 971.1 689 70.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.3e-275 953.0 682 69.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.2e-275 952.2 683 75.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-274 948.3 584 81.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.4e-271 937.9 716 67.0
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.6e-268 929.5 691 68.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.7e-265 917.9 518 90.7
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 8.3e-262 907.1 589 79.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.4e-261 905.6 566 80.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.0e-259 900.2 554 83.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.8e-249 865.5 496 89.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.5e-247 859.8 675 69.5
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.0e-227 793.9 681 58.6
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.4e-215 752.3 673 56.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.9e-207 724.2 470 82.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.7e-204 716.1 423 83.9
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.3e-153 547.7 328 80.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.4e-152 544.3 732 44.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.5e-141 507.7 755 38.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.7e-137 494.2 280 88.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.9e-129 466.8 273 85.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 6.0e-127 459.1 269 87.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.2e-120 436.8 359 63.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.0e-115 419.9 233 88.4
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 9.9e-114 415.2 744 35.5
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.9e-113 413.7 237 87.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-112 409.8 253 81.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.1e-112 409.1 262 83.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.1e-107 393.7 251 83.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.4e-81 305.8 182 80.2
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.6e-79 300.1 193 83.9
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.0e-78 297.4 215 70.7
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-73 280.8 154 87.7
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.9e-71 272.7 195 72.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.1e-64 252.3 192 74.5
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-60 237.3 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.4e-58 230.7 165 74.5
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.5e-58 230.3 170 70.0
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 9.4e-56 222.6 180 71.1
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.6e-55 220.7 214 60.3
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.5e-50 203.8 490 29.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.0e-49 202.6 124 83.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.2e-49 201.4 114 91.2
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.1e-43 180.6 104 87.5
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.7e-42 176.4 111 86.5
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.8e-38 162.9 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-30 139.0 103 68.9
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 8.9e-30 136.3 103 67.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 8.9e-30 136.3 103 67.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 2.0e-29 135.2 73 94.5
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.5e-29 133.3 151 53.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.4e-27 129.0 92 75.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.0e-26 125.2 81 77.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.9e-24 118.6 127 52.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 5.8e-21 107.1 69 72.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.7e-20 105.5 63 79.4
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 7.0e-19 100.1 77 67.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 7.0e-19 100.1 59 83.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.5e-18 97.8 57 82.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-17 94.7 93 55.9
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 5.6e-16 90.5 61 78.7
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 9.5e-16 89.7 65 73.8
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.4e-13 80.9 61 70.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 8.3e-12 76.6 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.4e-11 75.9 46 78.3
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.5e-10 71.2 40 92.5
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 1.8e-06 58.9 31 83.9


User provided reference genes

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