Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G555800 Prunus persica HOM05D002874 ORTHO05D003250 1.0e-70 270.0 138 100.0
MD08G1217700 Malus domestica HOM05D002874 ORTHO05D003250 3.8e-46 188.3 137 69.3
MD15G1405300 Malus domestica HOM05D002874 ORTHO05D003250 9.4e-45 183.7 137 68.6
RcHm_v2.0_Chr7g0227111 Rosa chinensis HOM05D002874 ORTHO05D003250 4.0e-43 178.3 137 65.0
TWI59G0939 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 4.4e-42 174.9 136 62.5
FvH4_5g31590 Fragaria vesca HOM05D002874 ORTHO05D003250 5.7e-42 174.5 137 63.5
Potri.013G105400 Populus trichocarpa HOM05D002874 ORTHO05D003250 2.2e-41 172.6 137 59.9
Cpa.g.sc66.5 Carica papaya HOM05D002874 ORTHO05D003250 2.8e-41 172.2 136 61.8
Cfa012972 Carpinus fangiana HOM05D002874 ORTHO05D003250 2.8e-41 172.2 137 62.8
PGR083G2530 Punica granatum HOM05D002874 ORTHO05D003250 6.3e-41 171.0 137 64.2
FAN08G3034 Fragaria x ananassa HOM05D002874 ORTHO05D003250 1.4e-40 169.9 137 64.2
FAN07G2383 Fragaria x ananassa HOM05D002874 ORTHO05D003250 4.1e-40 168.3 137 63.5
Manes.18G106200 Manihot esculenta HOM05D002874 ORTHO05D003250 7.0e-40 167.5 137 61.3
Atru.chr13.2374 Acer truncatum HOM05D002874 ORTHO05D003250 1.2e-39 166.8 136 60.3
Potri.019G078800 Populus trichocarpa HOM05D002874 ORTHO05D003250 1.2e-39 166.8 137 58.4
Gohir.A05G251600 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.6e-39 166.4 137 62.0
Gohir.D05G252200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.6e-39 166.4 137 62.8
Gorai.009G265000 Gossypium raimondii HOM05D002874 ORTHO05D003250 1.6e-39 166.4 137 62.8
CANSAT56G0379 Cannabis sativa HOM05D002874 ORTHO05D003250 3.5e-39 165.2 136 60.3
CANSAT56G0446 Cannabis sativa HOM05D002874 ORTHO05D003250 3.5e-39 165.2 136 60.3
THA.LOC104809729 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 4.5e-39 164.9 137 59.1
GSVIVG01026089001 Vitis vinifera HOM05D002874 ORTHO05D003250 4.5e-39 164.9 135 61.5
FAN18G1812 Fragaria x ananassa HOM05D002874 ORTHO05D003250 5.9e-39 164.5 136 62.5
CiPaw.08G003100 Carya illinoinensis HOM05D002874 ORTHO05D003250 2.2e-38 162.5 137 59.9
CSS0020391 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.1e-37 160.2 137 56.2
CSS0018795 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.9e-37 159.5 137 56.2
BcaC06g34971 Brassica carinata HOM05D002874 ORTHO05D003250 3.2e-37 158.7 136 57.4
BolC7t42639H Brassica oleracea HOM05D002874 ORTHO05D003250 3.2e-37 158.7 136 57.4
A07p14340 Brassica napus HOM05D002874 ORTHO05D003250 5.5e-37 157.9 136 57.4
Eucgr.F04113 Eucalyptus grandis HOM05D002874 ORTHO05D003250 5.5e-37 157.9 137 58.4
THA.LOC104800136 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 5.5e-37 157.9 137 58.4
Sc01g0002000 Simmondsia chinensis HOM05D002874 ORTHO05D003250 9.4e-37 157.1 137 54.7
Lalb_Chr15g0080121 Lupinus albus HOM05D002874 ORTHO05D003250 1.2e-36 156.8 137 55.5
Sabra13G0091100 Salix brachista HOM05D002874 ORTHO05D003250 1.2e-36 156.8 153 53.6
C07p21110 Brassica napus HOM05D002874 ORTHO05D003250 1.6e-36 156.4 136 56.6
Oeu059197.1 Olea europaea HOM05D002874 ORTHO05D003250 2.1e-36 156.0 134 57.5
AT1G72175 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 3.6e-36 155.2 137 54.0
AL2G31840 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 4.7e-36 154.8 137 54.7
BcaB03g14199 Brassica carinata HOM05D002874 ORTHO05D003250 4.7e-36 154.8 136 55.9
CiPaw.07G235400 Carya illinoinensis HOM05D002874 ORTHO05D003250 8.0e-36 154.1 137 56.2
Carub.0001s2204 Capsella rubella HOM05D002874 ORTHO05D003250 1.0e-35 153.7 137 55.5
Hma1.2p1_0004F.1_g004110 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 1.0e-35 153.7 135 60.0
Sabra19G0089700 Salix brachista HOM05D002874 ORTHO05D003250 1.0e-35 153.7 155 51.0
Carub.0002s1898 Capsella rubella HOM05D002874 ORTHO05D003250 1.4e-35 153.3 137 55.5
HanXRQChr04g0101991 Helianthus annuus HOM05D002874 ORTHO05D003250 1.8e-35 152.9 136 57.4
Nn1g08358 Nelumbo nucifera HOM05D002874 ORTHO05D003250 1.8e-35 152.9 137 54.0
Aa31LG4G8390 Aethionema arabicum HOM05D002874 ORTHO05D003250 2.3e-35 152.5 137 54.7
AT1G22510 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 2.3e-35 152.5 137 54.7
A07p38290 Brassica napus HOM05D002874 ORTHO05D003250 2.3e-35 152.5 137 54.0
BraA07t31393Z Brassica rapa HOM05D002874 ORTHO05D003250 2.3e-35 152.5 137 54.0
CARHR022860 Cardamine hirsuta HOM05D002874 ORTHO05D003250 2.3e-35 152.5 137 54.0
Haze_21316 Corylus avellana HOM05D002874 ORTHO05D003250 2.3e-35 152.5 178 48.9
ECA247G4052 Erigeron canadensis HOM05D002874 ORTHO05D003250 2.3e-35 152.5 136 55.1
Thhalv10019196m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 2.3e-35 152.5 137 53.3
BolC6t39680H Brassica oleracea HOM05D002874 ORTHO05D003250 3.0e-35 152.1 137 54.0
arahy.Tifrunner.gnm1.ann1.ULYQ5U Arachis hypogaea HOM05D002874 ORTHO05D003250 4.0e-35 151.8 137 54.0
CARHR065030 Cardamine hirsuta HOM05D002874 ORTHO05D003250 4.0e-35 151.8 137 54.0
PSO170G2830 Papaver somniferum HOM05D002874 ORTHO05D003250 4.0e-35 151.8 137 54.7
PSO782G4577 Papaver somniferum HOM05D002874 ORTHO05D003250 4.0e-35 151.8 135 55.6
MSTRG.1570 Avicennia marina HOM05D002874 ORTHO05D003250 5.2e-35 151.4 137 54.7
Nitab4.5_0005616g0060 Nicotiana tabacum HOM05D002874 ORTHO05D003250 5.2e-35 151.4 137 55.5
Os03g0839000 Oryza sativa ssp. japonica HOM05D002874 ORTHO05D003250 5.2e-35 151.4 135 51.9
Ciclev10002598m.g Citrus clementina HOM05D002874 ORTHO05D003250 6.8e-35 151.0 139 54.7
Cc10_g09520 Coffea canephora HOM05D002874 ORTHO05D003250 6.8e-35 151.0 137 54.7
PGSC0003DMG400026730 Solanum tuberosum HOM05D002874 ORTHO05D003250 6.8e-35 151.0 137 55.5
MBI17_g21478_MAGBIO Magnolia biondii HOM05D002874 ORTHO05D003250 8.8e-35 150.6 134 52.2
arahy.Tifrunner.gnm1.ann1.3TL6MN Arachis hypogaea HOM05D002874 ORTHO05D003250 1.2e-34 150.2 137 53.3
Rhsim12G0006100 Rhododendron simsii HOM05D002874 ORTHO05D003250 1.2e-34 150.2 137 51.8
Solyc11g027810.3 Solanum lycopersicum HOM05D002874 ORTHO05D003250 1.2e-34 150.2 137 55.5
TAR628G0883 Trochodendron aralioides HOM05D002874 ORTHO05D003250 1.5e-34 149.8 140 56.4
Aqoxy6G00106 Aquilegia oxysepala HOM05D002874 ORTHO05D003250 2.0e-34 149.4 137 54.0
BcaC08g46664 Brassica carinata HOM05D002874 ORTHO05D003250 2.0e-34 149.4 137 53.3
C06p46350 Brassica napus HOM05D002874 ORTHO05D003250 2.0e-34 149.4 137 53.3
CsaV3_6G002730 Cucumis sativus L. HOM05D002874 ORTHO05D003250 2.0e-34 149.4 137 55.5
Migut.C01326 Erythranthe guttata HOM05D002874 ORTHO05D003250 2.0e-34 149.4 137 52.6
Thhalv10008870m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 2.6e-34 149.1 136 53.7
Sp5g27260 Schrenkiella parvula HOM05D002874 ORTHO05D003250 2.6e-34 149.1 137 53.3
Sed0010548 Sechium edule HOM05D002874 ORTHO05D003250 2.6e-34 149.1 137 54.7
ATR0709G075 Amborella trichopoda HOM05D002874 ORTHO05D003250 4.4e-34 148.3 136 50.7
HanXRQChr02g0036891 Helianthus annuus HOM05D002874 ORTHO05D003250 4.4e-34 148.3 136 54.4
Glyma.04G255000 Glycine max HOM05D002874 ORTHO05D003250 5.7e-34 147.9 137 54.0
HPP92_003141 Vanilla planifolia HOM05D002874 ORTHO05D003250 7.5e-34 147.5 135 51.1
VMungo1080G0651 Vigna mungo HOM05D002874 ORTHO05D003250 9.8e-34 147.1 133 54.1
unitig_37.g13102 Utricularia gibba HOM05D002874 ORTHO05D003250 1.7e-33 146.4 135 52.6
CAN.G2.32 Capsicum annuum HOM05D002874 ORTHO05D003250 2.2e-33 146.0 137 54.0
Hund16773 Selenicereus undatus HOM05D002874 ORTHO05D003250 2.2e-33 146.0 137 54.0
Lj3g0022874 Lotus japonicus HOM05D002874 ORTHO05D003250 1.8e-32 142.9 138 51.4
BcaB05g24721 Brassica carinata HOM05D002874 ORTHO05D003250 1.2e-31 140.2 137 51.8
Nitab4.5_0001463g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.2e-31 140.2 137 52.6
MSTRG.25476 Avicennia marina HOM05D002874 ORTHO05D003250 3.5e-31 138.7 137 49.6
Lsat_1_v5_gn_1_25761 Lactuca sativa HOM05D002874 ORTHO05D003250 5.9e-31 137.9 129 53.5
SEGI_08350 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 1.3e-30 136.7 135 47.4
BcaB03g14961 Brassica carinata HOM05D002874 ORTHO05D003250 1.5e-29 133.3 137 51.1
Pp3c4_27320 Physcomitrium patens HOM05D002874 ORTHO05D003250 2.8e-28 129.0 135 45.2
SGA_v2.0_scaffold24G10609 Striga asiatica HOM05D002874 ORTHO05D003250 1.0e-27 127.1 121 50.4
AagrBONN_evm.TU.Sc2ySwM_362.905 Anthoceros agrestis HOM05D002874 ORTHO05D003250 3.0e-27 125.6 137 43.8
BcaC08g45227 Brassica carinata HOM05D002874 ORTHO05D003250 8.9e-27 124.0 133 48.1
Medtr3g005800 Medicago truncatula HOM05D002874 ORTHO05D003250 8.9e-27 124.0 138 45.7
TPR.G25522 Trifolium pratense HOM05D002874 ORTHO05D003250 1.2e-26 123.6 138 45.7
Psat1g008160 Pisum sativum HOM05D002874 ORTHO05D003250 9.8e-26 120.6 138 46.4
BcaB02g07327 Brassica carinata HOM05D002874 ORTHO05D003250 1.4e-24 116.7 135 46.7
Mapoly0062s0090 Marchantia polymorpha HOM05D002874 ORTHO05D003250 1.8e-24 116.3 137 43.1
EL10Ac1g00137 Beta vulgaris HOM05D002874 ORTHO05D003250 2.4e-24 115.9 157 43.3
Haze_21322 Corylus avellana HOM05D002874 ORTHO05D003250 2.0e-23 112.8 193 37.3
Thecc.08G192600 Theobroma cacao HOM05D002874 ORTHO05D003250 2.7e-23 112.5 137 46.0
DCAR_017446 Daucus carota HOM05D002874 ORTHO05D003250 3.5e-23 112.1 137 45.3
Duzib211G0598 Durio zibethinus HOM05D002874 ORTHO05D003250 7.8e-23 110.9 137 45.3
Duzib116G0473 Durio zibethinus HOM05D002874 ORTHO05D003250 2.3e-22 109.4 137 45.3
SMO347G0660 Selaginella moellendorffii HOM05D002874 ORTHO05D003250 3.9e-22 108.6 134 40.3
vmacro00978 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 4.3e-21 105.1 137 40.9
Manes.16G058241 Manihot esculenta HOM05D002874 ORTHO05D003250 2.3e-19 99.4 83 61.4
Manes.18G106700 Manihot esculenta HOM05D002874 ORTHO05D003250 4.0e-19 98.6 88 58.0
Peaxi162Scf00688g00428 Petunia axillaris HOM05D002874 ORTHO05D003250 6.8e-19 97.8 83 59.0
SHI08997 Sapria himalayana HOM05D002874 ORTHO05D003250 1.2e-18 97.1 99 52.5
HanXRQChr01g0023581 Helianthus annuus HOM05D002874 ORTHO05D003250 1.3e-17 93.6 83 60.2
CBR_g38544 Chara braunii HOM05D002874 ORTHO05D003250 2.9e-17 92.4 129 38.0
Ah.05g178590 Amaranthus hybridus HOM05D002874 ORTHO05D003250 4.9e-17 91.7 135 40.0
MELO3C025008.2 Cucumis melo HOM05D002874 ORTHO05D003250 1.1e-16 90.5 72 62.5
AUR62004599 Chenopodium quinoa HOM05D002874 ORTHO05D003250 1.9e-16 89.7 134 36.6
AUR62023545 Chenopodium quinoa HOM05D002874 ORTHO05D003250 4.1e-16 88.6 134 36.6
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 5.4e-16 88.2 70 64.3
Cpa.g.sc62.42 Carica papaya HOM05D002874 ORTHO05D003250 1.2e-15 87.0 118 39.0
CDE02G1341 Ceratophyllum demersum HOM05D002874 ORTHO05D003250 2.7e-15 85.9 78 52.6
HanXRQChr16g0501851 Helianthus annuus HOM05D002874 ORTHO05D003250 1.3e-14 83.6 71 62.0
AL1G36050 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 6.6e-14 81.3 74 48.6
Atru.chr5.2783 Acer truncatum HOM05D002874 ORTHO05D003250 1.5e-13 80.1 126 36.5
Atru.chr5.2798 Acer truncatum HOM05D002874 ORTHO05D003250 1.5e-13 80.1 126 36.5
Ciclev10029827m.g Citrus clementina HOM05D002874 ORTHO05D003250 1.9e-13 79.7 126 38.1
THA.LOC104807351 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 2.8e-12 75.9 124 37.1
COL.COLO4_11715 Corchorus olitorius HOM05D002874 ORTHO05D003250 8.1e-12 74.3 129 38.0
Manes.15G142950 Manihot esculenta HOM05D002874 ORTHO05D003250 8.1e-12 74.3 132 34.1
A01p04460 Brassica napus HOM05D002874 ORTHO05D003250 1.4e-11 73.6 126 32.5
BraA01t00433Z Brassica rapa HOM05D002874 ORTHO05D003250 1.4e-11 73.6 126 32.5
CARHR242040 Cardamine hirsuta HOM05D002874 ORTHO05D003250 1.4e-11 73.6 126 34.9
Sp7g31670 Schrenkiella parvula HOM05D002874 ORTHO05D003250 1.8e-11 73.2 126 34.1
Thecc.02G096400 Theobroma cacao HOM05D002874 ORTHO05D003250 3.1e-11 72.4 129 36.4
BcaNung04335 Brassica carinata HOM05D002874 ORTHO05D003250 4.0e-11 72.0 126 34.1
Thhalv10026077m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 5.2e-11 71.6 126 34.1
TWI75G1683 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 8.9e-11 70.9 127 35.4
C01p04850 Brassica napus HOM05D002874 ORTHO05D003250 1.2e-10 70.5 126 31.7
BolC1t00469H Brassica oleracea HOM05D002874 ORTHO05D003250 1.2e-10 70.5 126 31.7
CSS0000541 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.2e-10 70.5 126 33.3
CSS0036415 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 1.2e-10 70.5 126 33.3
Gohir.D01G006200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.5e-10 70.1 127 34.6
BcaNung02905 Brassica carinata HOM05D002874 ORTHO05D003250 2.6e-10 69.3 126 30.2
C07p60060 Brassica napus HOM05D002874 ORTHO05D003250 2.6e-10 69.3 126 30.2
COL.COLO4_24649 Corchorus olitorius HOM05D002874 ORTHO05D003250 2.6e-10 69.3 55 58.2
A03p62460 Brassica napus HOM05D002874 ORTHO05D003250 3.4e-10 68.9 126 31.0
BraA03t15313Z Brassica rapa HOM05D002874 ORTHO05D003250 3.4e-10 68.9 126 31.0
BolC7t46446H Brassica oleracea HOM05D002874 ORTHO05D003250 4.4e-10 68.6 126 30.2
Gohir.A01G006100 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.4e-10 68.6 101 39.6
Gorai.002G007200 Gossypium raimondii HOM05D002874 ORTHO05D003250 4.4e-10 68.6 128 35.2
Gorai.013G041100 Gossypium raimondii HOM05D002874 ORTHO05D003250 1.3e-09 67.0 127 34.6
Carub.0007s0648 Capsella rubella HOM05D002874 ORTHO05D003250 1.7e-09 66.6 126 31.7
Gohir.A13G038000 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.7e-09 66.6 127 34.6
AL7G17480 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 2.2e-09 66.2 126 31.7
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 2.9e-09 65.9 127 33.1
Gohir.D13G036400 Gossypium hirsutum HOM05D002874 ORTHO05D003250 2.9e-09 65.9 127 33.9
Lj7A286T52 Lonicera japonica HOM05D002874 ORTHO05D003250 2.9e-09 65.9 48 66.7
HanXRQChr03g0065221 Helianthus annuus HOM05D002874 ORTHO05D003250 3.7e-09 65.5 129 33.3
AT4G33940 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 4.9e-09 65.1 126 31.7
Haze_21319 Corylus avellana HOM05D002874 ORTHO05D003250 4.9e-09 65.1 56 51.8
Phvul.005G001800 Phaseolus vulgaris HOM05D002874 ORTHO05D003250 6.4e-09 64.7 54 59.3
Eucgr.I01172 Eucalyptus grandis HOM05D002874 ORTHO05D003250 8.3e-09 64.3 121 31.4
Oeu006595.1 Olea europaea HOM05D002874 ORTHO05D003250 8.3e-09 64.3 89 42.7
Potri.004G143900 Populus trichocarpa HOM05D002874 ORTHO05D003250 2.4e-08 62.8 129 34.1
Medtr3g005790 Medicago truncatula HOM05D002874 ORTHO05D003250 5.4e-08 61.6 86 39.5
ClCG08G002480 Citrullus lanatus HOM05D002874 ORTHO05D003250 7.1e-08 61.2 52 51.9
Nitab4.5_0001744g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 7.1e-08 61.2 125 32.8
Nitab4.5_0008546g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.2e-07 60.5 125 33.6
Sabra04G0095400 Salix brachista HOM05D002874 ORTHO05D003250 2.1e-07 59.7 129 32.6
BcaC08g45229 Brassica carinata HOM05D002874 ORTHO05D003250 2.7e-07 59.3 135 32.6
Sopen01g046380 Solanum pennellii HOM05D002874 ORTHO05D003250 2.7e-07 59.3 125 32.8
Medtr2g094040 Medicago truncatula HOM05D002874 ORTHO05D003250 3.5e-07 58.9 98 36.7
Solyc01g103980.4 Solanum lycopersicum HOM05D002874 ORTHO05D003250 3.5e-07 58.9 125 32.8
PGSC0003DMG400023800 Solanum tuberosum HOM05D002874 ORTHO05D003250 3.5e-07 58.9 125 32.8
Cc02_g22750 Coffea canephora HOM05D002874 ORTHO05D003250 4.6e-07 58.5 125 32.0
Dinv24301 Davidia involucrata HOM05D002874 ORTHO05D003250 1.3e-06 57.0 126 29.4
Eucgr.L03665 Eucalyptus grandis HOM05D002874 ORTHO05D003250 1.7e-06 56.6 48 60.4
ECA240G2758 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.3e-06 56.2 116 35.3
Rhsim11G0127600 Rhododendron simsii HOM05D002874 ORTHO05D003250 3.0e-06 55.8 142 28.9
Oeu032245.1 Olea europaea HOM05D002874 ORTHO05D003250 5.1e-06 55.1 124 30.6
DCAR_006694 Daucus carota HOM05D002874 ORTHO05D003250 6.6e-06 54.7 98 34.7
Lsat_1_v5_gn_7_78981 Lactuca sativa HOM05D002874 ORTHO05D003250 8.6e-06 54.3 119 31.9


User provided reference genes

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